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Hi! I've been trying the drift correction module recently, and I found it to be a really nice combination of tools for addressing this issue. However, I'm having trouble getting the final output from …
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Please fill in the following for any issues
Your setup:
1. Operating System (Linux, MacOS, Windows): Windows
2. Hardware type (x86, ARM..) and RAM: x86
3. Python Version (e.g. 3.9): 3.10.8
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Hello,
I'm getting a new recording object from "interpolate_motion" which I can explore with widgets.plot_traces and the motion correction is reflected on the traces. However, when I apply whitenin…
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I am helping the Losonczy Lab convert their calcium imaging data and I am having trouble with storing motion corrected images. Their software, [SIMA](https://github.com/losonczylab/sima), never actual…
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Just want to bring up this part of the code in `get_shifts`:
https://github.com/nel-lab/mesmerize-core/blob/6f46b98bfee8daf3078fa0b72e90909180feed61/mesmerize_core/caiman_extensions/mcorr.py#L115-L…
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## Description
Typically, after motion correction of fMRI timeseries, we compare the TSNR maps to ensure that the TSNR is not lower than before motion correction. We could add this feature in the …
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Hi,
I was interested in using this for HR-pQCT data, do you happen to have an example on how to use this using Python?
Thanks,
Matthias
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Hi,
I've noticed 2 things when running the motion corrections. First thing is that the recording object post correction has fewer channels. Is that deliberate?
Secondly, the estimate motion step i…
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Place under the `viz` module a reportlet generation tool, based on the comments here https://github.com/nipreps/dmriprep/pull/144#discussion_r561782596