nel-lab mesmerize-core issues

nel-lab / mesmerize-core

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn

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issues

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Parallelize projection computation and avoid running out of memory

#322 ethanbb opened 3 weeks ago
0
Use F order when reshaping masks

#321 ethanbb closed 1 month ago
2
dimensionality error

#320 vkonan closed 2 months ago
5
Exporting RCM as a .TIFF

#319 vkonan closed 2 months ago
3
Current status of mesmerize-viz and fastplotlib?

#318 FlynnOConnell closed 2 months ago
2
Make get_shifts return value more useful; add test for shifts

#317 ethanbb closed 2 months ago
0
Downstream analysis?

#316 Agrajag1984 opened 2 months ago
5
Fix conda builds defaulting to python 3.12

#315 ethanbb closed 2 months ago
1
Fix z shift saving for piecewise mcorr

#314 ethanbb closed 2 months ago
0
Installation Issues

#313 CeeLo opened 2 months ago
10
Question/ issue: Does mesmerise-core work with 3D movies?

#312 rajlakshmi-sawale opened 3 months ago
29
Add async_local backend and allow using an existing dview for local and async_local backends

#311 ethanbb opened 3 months ago
3
List of shifts for pw_rigid motion correction is difficult to interpret

#310 ethanbb closed 2 months ago
3
Don't filter out NaNs for contours

#309 ethanbb opened 4 months ago
13
Filtering out NaNs in contours creates spurious lines between sub-contours and rust panic if any contours are empty

#308 ethanbb opened 4 months ago
0
Kernel unexpectedly dying; line of code: viz_cnmf.show

#307 CharlotteWenxin closed 2 months ago
16
caimanmanager install no longer working with SciPy 1.14

#306 gusmihaian closed 5 months ago
1
Use Path.resolve() consistently to prevent UNC/drive letter ambiguity

#304 ethanbb opened 5 months ago
3
Change get_params_diffs to only use <default> if param is actually missing

#303 ethanbb closed 4 months ago
0
mcorr_cnmf notebook running cnmf error

#302 CharlotteWenxin closed 5 months ago
2
installation problem

#301 CharlotteWenxin closed 5 months ago
3
Fix motion correction and CNMF for 3D movies

#300 ethanbb closed 3 months ago
5
More changes for nested parameters

#299 ethanbb closed 4 months ago
1
Run items using SLURM; save batches with platform-independent paths

#298 ethanbb closed 4 months ago
8
Allow non-hashable types and nested params in get_params_diffs

#297 ethanbb closed 5 months ago
4
Motion correction output F order only

#296 zhouyi0812 closed 7 months ago
1
error: zerodivisionerror

#295 zhouyi0812 closed 7 months ago
4
What is the detrend_df_f function

#294 qweasdf1354 closed 7 months ago
1
No matching distribution found for LazyTiff

#292 lea-danics closed 8 months ago
5
CNMF Fails on Windows with 'need at most 63 handles, got a sequence of length 65' Error

#291 Tepps-ps closed 8 months ago
6
Module 'fpl' has no attribute 'ImageWidget'

#290 lea-danics closed 8 months ago
2
AttributeError: 'TiffPageSeries' object has no attribute 'levels' with demo data

#289 zhouyi0812 closed 8 months ago
1
Error while running demo notebood 'mcorr_cnmf'

#285 pbl007 closed 8 months ago
3
AttributeError: 'TiffPageSeries' object has no attribute 'levels'

#284 zhouyi0812 closed 8 months ago
5
ModuleNotFoundError: No module named 'mesmerize_viz'

#283 zhouyi0812 closed 8 months ago
3
corr-pnr plot not accepting 'controllers' variable

#282 blogeman closed 8 months ago
6
IndexError

#281 Frank497 closed 8 months ago
2
motion correction failed

#280 Frank497 closed 8 months ago
5
int32 not sufficient for nbytes

#279 nspiller closed 9 months ago
3
widget wont load

#278 blogeman closed 9 months ago
6
demo for downstream analysis

#277 zhouyi0812 closed 9 months ago
3
Computer crashes with cnmf.run_detrend_dfof

#276 restrepd closed 9 months ago
2
Error in loop cnmfe

#275 zhouyi0812 closed 8 months ago
3
extract mcorr movie as tiff

#274 Jorgenhoyer closed 9 months ago
4
problem with caiman.remove_item

#273 Jorgenhoyer closed 9 months ago
4
Issues with mesmerize Execution: Missing Packages in Active Conda Environment

#272 Tepps-ps closed 9 months ago
19
`python: command not found error` when calling runfile

#271 vncntprvst opened 9 months ago
1
run_eval output

#270 zhouyi0812 closed 8 months ago
10
How to adjust n_processes in mescore

#269 zhouyi0812 closed 9 months ago
1
Rename the output from mescore?

#268 zhouyi0812 closed 9 months ago
8