nel-lab mesmerize-core issues

nel-lab / mesmerize-core

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn

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issues

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Filtering out NaNs in contours creates spurious lines between sub-contours and rust panic if any contours are empty

#308 ethanbb opened 1 week ago
0
Kernel unexpectedly dying; line of code: viz_cnmf.show

#307 CharlotteWenxin opened 3 weeks ago
10
caimanmanager install no longer working with SciPy 1.14

#306 gusmihaian closed 3 weeks ago
1
Use Path.resolve() consistently to prevent UNC/drive letter ambiguity

#304 ethanbb opened 4 weeks ago
1
Change get_params_diffs to only use <default> if param is actually missing

#303 ethanbb closed 4 days ago
0
mcorr_cnmf notebook running cnmf error

#302 CharlotteWenxin closed 1 month ago
2
installation problem

#301 CharlotteWenxin closed 1 month ago
3
Fix motion correction and CNMF for 3D movies

#300 ethanbb opened 1 month ago
2
More changes for nested parameters

#299 ethanbb closed 4 days ago
1
Run items using SLURM; save batches with platform-independent paths

#298 ethanbb closed 4 days ago
8
Allow non-hashable types and nested params in get_params_diffs

#297 ethanbb closed 1 month ago
4
Motion correction output F order only

#296 zhouyi0812 closed 2 months ago
1
error: zerodivisionerror

#295 zhouyi0812 closed 3 months ago
4
What is the detrend_df_f function

#294 qweasdf1354 closed 3 months ago
1
No matching distribution found for LazyTiff

#292 lea-danics closed 4 months ago
5
CNMF Fails on Windows with 'need at most 63 handles, got a sequence of length 65' Error

#291 Tepps-ps closed 4 months ago
6
Module 'fpl' has no attribute 'ImageWidget'

#290 lea-danics closed 4 months ago
2
AttributeError: 'TiffPageSeries' object has no attribute 'levels' with demo data

#289 zhouyi0812 closed 4 months ago
1
Error while running demo notebood 'mcorr_cnmf'

#285 pbl007 closed 4 months ago
3
AttributeError: 'TiffPageSeries' object has no attribute 'levels'

#284 zhouyi0812 closed 4 months ago
5
ModuleNotFoundError: No module named 'mesmerize_viz'

#283 zhouyi0812 closed 4 months ago
3
corr-pnr plot not accepting 'controllers' variable

#282 blogeman closed 4 months ago
6
IndexError

#281 Frank497 closed 4 months ago
2
motion correction failed

#280 Frank497 closed 4 months ago
5
int32 not sufficient for nbytes

#279 nspiller closed 5 months ago
3
widget wont load

#278 blogeman closed 5 months ago
6
demo for downstream analysis

#277 zhouyi0812 closed 4 months ago
3
Computer crashes with cnmf.run_detrend_dfof

#276 restrepd closed 5 months ago
2
Error in loop cnmfe

#275 zhouyi0812 closed 4 months ago
3
extract mcorr movie as tiff

#274 Jorgenhoyer closed 5 months ago
4
problem with caiman.remove_item

#273 Jorgenhoyer closed 5 months ago
4
Issues with mesmerize Execution: Missing Packages in Active Conda Environment

#272 Tepps-ps closed 4 months ago
19
`python: command not found error` when calling runfile

#271 vncntprvst opened 5 months ago
1
run_eval output

#270 zhouyi0812 closed 4 months ago
10
How to adjust n_processes in mescore

#269 zhouyi0812 closed 5 months ago
1
Rename the output from mescore?

#268 zhouyi0812 closed 5 months ago
8
Plots not displaying with a RTX A2000 on Windows

#267 JohnStout closed 5 months ago
18
install mescore on computer

#266 zhouyi0812 closed 5 months ago
2
continued quality assessment through mescore

#265 zhouyi0812 closed 5 months ago
4
CNMFE process dies silently without any error traceback

#264 X4ndri closed 6 months ago
2
Explanation for warning message

#263 zhouyi0812 closed 5 months ago
7
Question about 1p data processing

#262 zhouyi0812 closed 5 months ago
3
Issue with cnmfe notebook with fastplotlib

#261 JohnStout closed 6 months ago
3
Getting denoised dF/F

#260 kingmiaomiao closed 7 months ago
6
Assessing the noise level before gsig_filt

#259 zhouyi0812 closed 6 months ago
6
Evaluate Bleaching on the movie

#258 zhouyi0812 closed 7 months ago
5
Movie path and caiman path can be different?

#257 zhouyi0812 closed 7 months ago
2
Kernel unexpectedly dying; line of code: viz_cnmf.show(sidecar=True)

#256 santicolom closed 6 months ago
10
NotImplementedError: cannot instantiate 'PosixPath' on your system

#255 qweasdf1354 closed 7 months ago
3
AttributeError: 'TiffPageSeries' object has no attribute 'levels'

#254 santicolom closed 8 months ago
2