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I am trying to install sra-tools. I have downloaded SRA-tools and NCBI-VDB tarballs and then extracted the tarballs. The versions that I have for both are 3.1.1.
I was able to configure and make N…
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I followed the instructions in the Wiki to build (compile) and install the SRA Toolkit, but the install process failed with the following error message (last 13 lines of stderr shown):
```
...
CM…
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### Version
1
### DataCap Applicant
Nixon
### Project ID
1
### Data Owner Name
NLM
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website…
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Hello!
Thank you very much for your contributions and your publicly available data!
I have a question regarding the 11 genomes mentioned in your article. Could you kindly let me know if it is po…
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Error message I received:
$ aws s3 cp s3://logan-pub/c/SRR18385003/SRR18385003.contigs.fa.zst . --no-sign-request
fatal error: An error occurred (404) when calling the HeadObject operation: Key "c…
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Dear SRA creators,
I trying to dowload data from https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=769413 , here is the process I am doing:
`esearch -db bioproject -query PR…
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- [ ] check the runinfo to make sure the sample can be combined (i.e. same pairedness, insert size, read length)
- [ ] make sure we don't process the same file twice
- [ ] concatenate output file…
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Paper text:
> All raw sequencing data in FASTQ format are available in the NCBI Sequence Read Archive (SRA) BioProject database under accession number PRJNA956585 as BioSamples SAMN34224450–SAMN3422…
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Hi @colindaven @sannareddyk @B1T0 @Colorstorm @BioNij
Wochenende ran well when we inputed cfdna fastq profiles containing human reads as well with other pathogenic reads.
We were interested in…
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Hi, I am trying to use Nanopore and some illumina reads from SRA database, I provided the fastq file from SRA its not working with the file, is there any way that can i use the fastq downloaded file f…