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Hi. Hope you're all ok.
I'm using treetime on google colaboratory and installed just like the tutorial. I've tried de .tsv and .csv file but it ends the same way everytime:
"MissingDataError: ERR…
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I have installed it as mentioned in the given link https://github.com/neherlab/pan-genome-analysis/blob/master/README.md
step 1
Installed:- git clone https://github.com/neherlab/pan-genome-analys…
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### Current Behavior
```sh
$ augur refine --tree results/tree_raw.nwk --alignment results/aligned.fasta --metadata data/metadata.tsv --output-tree results/tree.nwk --output-node-data resu…
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*Low severity*
**Current Behavior**
The build selector of nextstrain.org auspice does not show available groups and group types (`groups`/`community`) in contrast to how one would expect.
**How…
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nuc:7851T is not masked. What's going on here? Why is it not all on one branch? Is this a broader iqtree problem just showing up drastically like this or something else?
Build for example: https://…
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Hi Andy @andywer ,
We are having a great success using your library and it unlocks all kinds of new possibilities for client-side compute, and, hopefully, will serve some COVID-19 researchers soon:…
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# 🙋 Feature Request
## 🔦 Context
Currently all the data (default scenarios, case counts, age and severity distributions)
https://github.com/neherlab/covid19_scenarios/tree/master/src/…
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@corneliusroemer experimented with [IQ-TREE's constraint tree option](http://www.iqtree.org/doc/Advanced-Tutorial#constrained-tree-search) to prevent IQ-TREE from putting clades in the wrong place for…
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### Context
I'm getting an error when uploading but it's not clear what the issue is from the messages I'm getting.
I feel like it would be helpful to have more verbose output to at least have a c…
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search the node in the tree with the closest sequence. In general, this requires pairwise alignment. I implemented a banded pairwise alignment here:
https://github.com/neherlab/timetree_viewer/blob/ma…