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### Description of feature
Gene Score computation --> should be subworkflow within nf-core subworkflows and then be contributed to differentialabundance and/or can be used in both pipelines equivalen…
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### Description of the bug
Some times this lint is a warning, sometimes it's a failure?
Logs
```console
│ vcf_annotate_snpeff │ subworkflows/nf-core/vcf_annotat… │ n…
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### Description of feature
Add module decoupleR (and progeny)to nf-core/modules
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Started looking into warnings for https://github.com/nf-core/tools/issues/3294 and saw one about `monochrome_logs` being unused here:
https://github.com/nf-core/tools/blob/41b4516e1b5dedca816749ca2a0…
ewels updated
14 hours ago
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I was testing `pipeline_v6.0` branch of `nf-core/oncoanalyser` in targeted mode. `purple` failed as below only for some of the samples. Same [issue](https://github.com/nf-core/oncoanalyser/issues/100)…
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### Description of the bug
From terminal output (see below) I see that nextflow tries unsuccessfully to run this:
`singularity pull --name nf-core-bedtools_coreutils-a623c13f66d5262b.img.pulling.1…
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### Description of bug
After updating the module version of MultiQC from 1.24.1 to 1.25.1 in https://github.com/nf-core/nanostring, nf-tests started failing. Running nf-tests locally generates files …
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### Have you checked the docs?
- [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [X] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules)
### …
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## Bug report
`nextflow inspect nf-core/rnaseq` fails with error:
```
The following invalid input values have been detected:
You used a core Nextflow option with two hyphens: '--cache'. Ple…