-
if fastqs are already organize as directory, create json like https://ngless.embl.de/yaml-list.html#specifying-a-list-of-samples-in-a-yaml-file
-
I tried snack on a clean checkout of [NGLess](https://github.com/ngless-toolkit/ngless) and it first ran for a while, then it errored. From then on, running `snack build` runs for about a minute and t…
-
Thank you for developing such an excellent tool as semibin2, which performs exceptionally well and can generate a large number of high-quality MAGs.
Therefore, we are interested in applying semibin…
-
I'm not sure if this is a bug or just undocumented behaviour, but the following will raise an exception:
CP.sourceProcessWithStreams
(proc "false" [])
(CC.yieldMan…
-
Hi
```
conda create -n ngless
source activate ngless
ngless --download-demo gut-short
(ngless) [ckzhu@vm-login02 gut-short]$ ngless gut-demo.ngl
Exiting after fatal error while loading and ru…
-
Sometimes when I'm testing things, jobs fail and leave active locks behind.
Subsequent calls fail as they cannot obtain any lock.
Currently I workaround this by removing the `ngless-locks` folder …
unode updated
6 years ago
-
We should try and rebuild these feedstocks from source once we have #24 and better haskell dependency packaging in conda-forge.
- [ ] https://github.com/conda-forge/git-annex-feedstock
- [ ] https…
-
This was noticed when setting up the [motus ngless-contrib module](https://github.com/ngless-toolkit/ngless-contrib/tree/master/motus.ngm).
The following ngless script runs fine, but I'm not sure i…
unode updated
4 years ago
-
Currently NGLess uses two stages for execution. A first stage verifies that the script and output files are consistent (equivalent to `--validate-only`) and a second stage where computation happens if…
unode updated
4 years ago
-
We were trying to add a filtering step as an external module (having a read set as input and output). However, only counts and mapped read sets are supported at the moment, everything else throws an e…
mkuhn updated
2 years ago