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Hi people,
I hope this is the right place to ask my question. If not, than please let me know an alternative. :)
I am kind of new in the world of whole genome alignments. I wanted to create a s…
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Hello OPERA-MS Team,
I received an error which is very similar to issue #72.
`Error in during gap_filling. Please see /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybri…
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Thank you for developing such an excellent tool. The paper “Duck pan-genome reveals two transposon insertions caused bodyweight enlarging and white plumage phenotype formation during evolution” mentio…
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While developing the snakemake interaction, we need to be confident that our output is correct.
We should use `pytest` to manage this process (so a `tests` directory etc. wil be required) and we will…
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Hi, I do not understand this process:
"For example, in order to use NUCMER (all-vs-all comparison of nucleotide sequences contained in FastA files) with E-MEM, simply change all the references to m…
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Hi thanks for the great tool.
I am trying to calculate ANI between multi-contigs bins, where each viral bin consists of multiple contigs.
However, length estimate is different from the original one,…
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Hello!
Thank you for this brilliant tool.
I've been using it for an application in which syntenies inferred using `mummer`'s `nucmer` (so, at the DNA-level) were partial, when compared with `mumme…
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![image](https://user-images.githubusercontent.com/23168361/121625282-be890f00-caa5-11eb-9296-0cdc45524442.png)
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Hi,
I'm new to nucdiff. `I installed in a Conda environment on macOS and used the below code but Nucmer wouldn't run? Could anyone help me please?
/Users/peterflanagan/miniconda3/envs/nucdif…
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Hello! I am attempting to patch a scaffold-assembled reference genome of a congener of my focal bird species (TANG, in the code below) with a chromosome-level reference genome of a more distantly rela…