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For initial assessment of the best strategy of migrating OmniPath to BioCypher, we will build a pipeline with secondary adapter and create a representative schema of the OmniPath KG to be developed. D…
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Including its own repository in the biocypher org
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Hi! I had some issue with get_progeny() function.
This is the warning:
```
[2024-10-31 16:40:37] [WARN] [OmnipathR] [decoupleR] Failed to check the list of available resources in OmniPath. Pr…
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Uses: #143 #117 #111 #151
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Sender and receiver are not alphabetical and scaled ligand activity also not increasing nor decreasing. Function documentation doesn't mention anything about row ordering, so it is not clear what to e…
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Hi,
where can I find omnipath tutorials? I have installed omnipath(Python client for the OmniPath web service), but I don't know how to use it and I cannot find documentation on this github. Or, who …
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`make_sample_lr_prod_activity_plots_Omnipath` plot is very big. Also, I have three phenotypes for each sample, two conditions per phenotype. Age: Old, Young, Diesase Recurrence: No, Yes. Smoker: No, Y…
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There were some issues with specifying paths on windows.
Tore looked into this and looks like he did some work in the `omnipath` branch.
-> Look over TH's changes, integrate them into the main …
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As you can see, I loaded these R packages correctly, but when I run the get_curated_omni function, I …
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### Steps to reproduce
I ran into this with concretization with multiple threads/processes (however you do it). I'm guessing it's a race condition - one process unlinks the file and the rest try to d…