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### **Describe the bug**
When running `decoupler` to infer transcription factor activities using `dc.run_ulm` and pathway activities using `dc.run_mlm`, I encounter an incompatibility issue with `pyp…
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For initial assessment of the best strategy of migrating OmniPath to BioCypher, we will build a pipeline with secondary adapter and create a representative schema of the OmniPath KG to be developed. D…
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Including its own repository in the biocypher org
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Hi! I had some issue with get_progeny() function.
This is the warning:
```
[2024-10-31 16:40:37] [WARN] [OmnipathR] [decoupleR] Failed to check the list of available resources in OmniPath. Pr…
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Aquí tienes un ejemplo estructurado de cómo escribir un informe del error que estás experimentando:
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**Title**: Error while running `get_progeny`: Invalid block type during data decompression…
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Uses: #143 #117 #111 #151
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As you can see, I loaded these R packages correctly, but when I run the get_curated_omni function, I …
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Hi,
where can I find omnipath tutorials? I have installed omnipath(Python client for the OmniPath web service), but I don't know how to use it and I cannot find documentation on this github. Or, who …
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`make_sample_lr_prod_activity_plots_Omnipath` plot is very big. Also, I have three phenotypes for each sample, two conditions per phenotype. Age: Old, Young, Diesase Recurrence: No, Yes. Smoker: No, Y…
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Database integration is a feature of liana. Has the author considered making the database interactive with web pages to make it easier to query the database?