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I tried to run following given command:
`bash $path_of_the_pipeline/1Genome_construct_Pangenome.sh ref.fa query.fa > job.sh && bash job.sh
`
But 1Genome_construct_Pangenome.sh script is not provi…
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Determine the requirements and potential options for the basis of the Pangenome Annotation RNA-seq pipeline.
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Add Sanger's Roary pipeline to GVL and Galaxy.
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"We mapped reads to the pangenome to efficiently capture telomere length across the diverse
population. A references file of 500kb of subtelomere sequences was assembled from each of the
genomes (…
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Just wonder if MicrobeAnnotator can be combined with results from pangenmoe pipeline?
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Hi,
We have dozens of plant HiFi assemblies of inbreeding line, my previous test work on pggb for parameters tuning. I noticed the newest version of cactus including updates of pangenome pipeline.…
baozg updated
2 years ago
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Hi all,
I'm running the Pangenome Pipeline using the latest Cactus binary realease (cactus-bin-v1.3.0.tar.gz). The first two steps went well, while the last one, cactus-align, returned me an error …
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Can you provide a detailed explanation on how to run this process? I am a beginner and don't quite understand. Thank you very much
tttxd updated
2 months ago
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Hello rpvg team:
I've successfully gotten the .gamp file of the transcriptome file with vg mpmap and there was no problem at all. But when I run rpvg, I have this error:
Running rpvg (commit: cd51…
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Hi,
I am getting error when running job with multiple processors.
`-[Arcadia-Science/prehgt] Pipeline completed with errors-ERROR ~ Error executing process > 'ARCADIASCIENCE_PREHGT:PREHGT:build_genu…
onbio updated
3 months ago