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Hi!
I saw in the wiki that one could upload a parcellation file of type nii, but, from what I understand, the output of freesurfer is .anot files for the parcellation.
I wondered if I might be missi…
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Hi,
I am processing a neonatal dataset with the pipeline and the results look really good. However, I was wondering when the cerebellum segmentation/parcellation, and whole brain parcellation will …
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`_align_images_to_template` instantiates a bunch of `PairwiseAlignment` estimators, each of which generate their own parcellation of the data. I would argue that a single parcellation should be comput…
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Hi,
First, thank you for the recent work on mouse brains. I'm genuinely excited about and the potential to accelerate some of our work. I have one quick question (as of right now, anyway):
In th…
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Right now the only type of segmentations that are supported are Freesurfer or SynthSeg (same LUT as freesurfer). We can keep this custom parc option for users, but perhaps by default we should just ad…
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- CAPS discrete surface segmentation information (parcellation) seems to need to transition to giftii files as per [BIDS spec](https://bids-specification.readthedocs.io/en/stable/05-derivatives/03-ima…
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This is not an issue per se, but more of a discussion for improvement.
I like the dataset fetching part of nilearn, not just the individual functions, but the collection as a whole is helpful in th…
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**Please see information online on making your own atlas**
Looking to see if anyone has already done this prior to creating myself. As I am a novice - I would be more comfortable having known this wa…
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### Expected situation
Hi! I noticed that the Schaefer atlas (1000, 17N) does not perfectly overlap with the MNI template that was used when creating the atlas, according to the information of the …
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There are a number of brain parcellation schemes that we want to ingest into the ontology. Allen MBA and cocomac have been ingested (though cocomac has not been fully integrated into the ontology), bu…