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In ["Genomics Reveals Complex Population History and Unexpected Diversity of Eurasian Otters (Lutra lutra) in Britain Relative to Genetic Methods", du Plessis et al., 2023, `10.1093/molbev/msad207`](h…
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Hi,
I've been using PopLDdecay to analyze LD decay across multiple populations (7), but I'm noticing a wavy pattern in the decay curve that seems unusual. I would like to achieve a smoother LD deca…
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https://benjaminmount.github.io/2024/08/22/Study-Notes-Genomics/
0 Preface基因组学包括转录组学（Transcriptomics）、蛋白质组学（Proteomics）、表观基因组学（Epigenomics）、宏基因组学（Metagenomics）、群体基因组学（Population Genomics）、进化基因组学（Ev…
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**Is your feature request related to a problem? Please describe.**
This is the list of Categories on Dockstore, though manual curation is slow:
```
COVID-19
Genomics Toolsets
Alignment
Assembly
Asso…
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While most human population genomics datasets are now able to achieve >30x sequencing coverage on the regular, for a lot of non-model organism studies its becoming more popular to instead use low-cove…
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Hello,
I work on freshwater fish population genomics. I'm curious about using FEEMS with grid confined to a river network. To that end, I generated a resolution 14 ISEA4T grid with DGGRID and cropp…
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TileDB-VCF has some similar features to Zarr for storing VCF: https://docs.tiledb.com/main/integrations-and-extensions/genomics/population-genomics
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I am trying to clump locally via the ld_clump funciton:
Here is my code:
```
IndeSNP=ld_clump(dplyr::tibble(rsid=dat$SNP, pval=dat$pval.exposure, id=dat$id.exposure),
plink_bin= …
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Dear @tsackton @erikenbody and other developers,
Thanks for developing such a capable and interesting tool!
I am looking to deploy snpArcher for population genomics projects but the starting dat…
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> Next-generation sequencing (NGS) technologies have enabled affordable sequencing of billions of short DNA fragments at high throughput, paving the way for population-scale genomics. Genomics data an…