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Does Dfast identify pseudogenes?
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Four of the gene symbols listed as dark kinase (Tdark) refer to pseudogenes, but this is not reflected in the display in the shiny app.
PRKY
https://www.genenames.org/data/gene-symbol-report/#!/hg…
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I perform a wide-scale test using the recommonded scripts " ./toga.py test_input/hg38.mm10.chr11.chain test_input/hg38.genCode27.chr11.bed test_input/hg38.2bit test_input/mm10.2bit --kt --pn test -i …
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Hi,
Thanks for this fantastic tool. I would like to bulk download all the available files of pseudogenes (*_pseudo_without_product.fna.gz). As far as I understand, this file type is not supported …
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There are some pseudogenes in RECON3D which don't belong there and should be removed from the genes and the gene associations:
https://vmh.uni.lu/#gene/645740.1
https://vmh.uni.lu/#gene/8781.1
ht…
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- [ ] on hold till we have enough diagnostic samples (300 Samples)
- [ ] check region of DarkMatter paper on LR data
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@rachellyne Look at this gene:
https://beta.humanmine.org/beta/pseudogene:gene0
This isn't a bug, this feature is being created correctly (given the config we have). The feature comes from the N…
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JBrowse has track filtering, and one way of accessing it is through the track menu. The UI for adding filters looks like this:
![image](https://github.com/user-attachments/assets/6486dd5c-86cc-4eb8-9…
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DEAR Prof. BRAIN @brianjohnhaas
Hi, I have identified the genes in my genome using EVM (as discussed with you before, the results and process can be roughly referred to https://github.com/EViden…