-
Hi all,
I ran into this error, which I don't understand what is related to (see log below - sorry for the huge log)!
This was my command:
```shell
${TRINITY_HOME}/Trinity --seqType fq \
--samp…
-
Hi Brian, I’m submitting trinity on a slurm scheduler that has a max time limit. This limit is not sufficient for the size of my dataset. I know that trinity can pick up where it left off, but I am no…
-
GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
refers to the pathway performed by the Las1 compex
Definition
A four s…
-
# Issue Report
Brief question/probing
## Please describe the issue:
I wonder if there's any upcoming 7mG modification model to be applied for rRNAs' direct RNA-seq.
I'm currently using differr (h…
-
Dear team;
Thanks for providing those wonderful reference genome. It helps me a lot in my research. I met a problem that many of my reads could mapped to rrna region but was classified to not aligned…
-
This issue illustrates how NCBI Datasets API can be used to generates JSON blobs necessary for rendering filament pages (https://github.com/galaxyproject/brc-analytics/issues/130).
## Linked Ticket…
-
It may be a good idea to shift the metadata source from metrics to coldata in the long run. For anything other than human or mouse I have been removing the rrna part in the QC due to the extra file ne…
-
## Short description of the problem
Even in single-contig circularized genomes, `anvi-run-hmms` does not reliably detect the 5S rRNA gene.
## anvi'o version
```
Anvi'o ......................…
-
Dear KrakenUniq team,
I have a theoretical question - I was wondering if you could suggest something here. I am using KrakenUniq to classify bacterial reads from RNA-seq experiments. The database …
-
Hi, we are attempting to train and test rRNA data using SignalAlign. We would appreciate some insights into the program and any suggestions to move forward to.