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Hi Dr. Kim,
This work is very impressive! I am working on a scRNAseq analysis project of my own in which I am attempting to integrate multiple publicly available scRNAseq datasets together for simi…
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Hi, you've done a fantastic work!
I want to use your scRNA data as reference, but the rds.gz file in [GSE264407] seemed to be broken up, could you share me the good one?
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### Description of the bug
Specifying indices should work as expected from a nf-core pipeline, i.e.
* igenomes should be respected
* it shall be possible to specify pre-computed indices and they sh…
grst updated
14 hours ago
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```shell
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You are running Scasa v1.0.1 using docker ....
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### Description of the bug
I am having trouble getting the following test to work. Any clues to what I am doing wrong.
The command I ran was:
nextflow run nf-core/scrnaseq -profile test,docker --o…
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Hello,
I ran cellsnp-lite with the following command for calling variants in mitochondrial transcripts in 10X scRNAseq data and for each of three independent samples, received 16,299 variants, which …
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### Description of the bug
I am trying to run the scrnaseq nextflow workflow with the following error message:
ERROR ~ Error executing process > 'NFCORE_SCRNASEQ:SCRNASEQ:GTF_GENE_FILTER ([])'
…
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Hi Alex,
I have a question about best practices for dealing with multi-mapping reads in scRNA-seq data analysis, particularly when looking at transposable elements (TEs). Due to the nature of TEs,…
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老师好，我在跑去双细胞过程时遇到了以下报错，这应该是发生在你fix上一个有关的bug后
## devtools::install_github('chris-mcginnis-ucsf/DoubletFinder')
> library("DoubletFinder")#注意一定要先运行
> source("./scRNA_scripts/doubletFinder_v3.R")
> so…
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### Description of the bug
Running CellRanger with all GEX samples, in which there are multiple barcodes per sample, but the all go to the same sample (see the samples & barcodes tables below).
Thi…