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Can I used BayesPrism to perform deconvolution on the microarray results (e.g., RMA expression values) by the scRNAseq reference? Suppose I take the relative expressions of RMA values and scRNAseq cou…
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### What kind of feature would you like to request?
New analysis tool: A simple analysis tool you have been using and are missing in `sc.tools`?
### Please describe your wishes
LigRec and so on
…
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### Description of the bug
The error appear when nf-core/scrnaseq is launched with any aligner at the emptydrop step. The pipeline is labelled as completed but with errors as it failed with the outp…
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### Description of the bug
I am trying to run the scrnaseq nextflow workflow with the following error message:
ERROR ~ Error executing process > 'NFCORE_SCRNASEQ:SCRNASEQ:GTF_GENE_FILTER ([])'
…
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Hi,
I am currently trying to combine my processed Visium and scRNAseq data using the multimodal run. Following the tutorial I was able to process the data and was able to see the combine feature (G…
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### Description of the bug
nf-core/scrnaseq test using conda fails with the following error message. Fetched from '.nextflow.log'. Thanks!
Caused by:
Process `NFCORE_SCRNASEQ:SCRNASEQ:MTX_CONV…
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### Description of the bug
```bash
nextflow run main.nf \
-ansi-log false \
-profile docker,gcp \
-work-dir gs://path/to/bucket/scrnaseq/work \
--input samples.csv \
--protocol…
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Hi Alex,
I have a question about best practices for dealing with multi-mapping reads in scRNA-seq data analysis, particularly when looking at transposable elements (TEs). Due to the nature of TEs,…
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Hi
I am getting the following error when aligning my 5' 10X CRISPR scRNAseq data using alevin fry:
/mnt/dv/wid/projects6/Roy-singlecell3/sridharanlab2/data/perturb-seq_on_reprogramming/fastq/G…
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My error comes from step 8.1 from 'Full Manual', specifically I am getting the error
**