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We can reuse tooling from the [scverse template](https://github.com/scverse/cookiecutter-scverse) for our existing project, by linking it with [cruft](https://github.com/cruft/cruft).
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### Project
scverse
### Observations
See comments from [ivirshup](https://github.com/ivirshup) at: https://github.com/numfocus/infrastructure/issues/34#issuecomment-2146306762
Looks like the git…
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Related to https://github.com/scverse/anndataR/pull/183#discussion_r1830509620
Are we aiming for a CRAN or a BioConductor release?
What are the pros for both platforms?
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Mostly FYI:
I noticed that the community behind `scanpy` and `anndata` (which was used as the backend data model for `omicser`) have formed the scverse: https://scverse.org/packages/#ecosystem
It lo…
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### What kind of feature would you like to request?
Additional function parameters / changed functionality / changed defaults?
### Please describe your wishes
Meta issue tracking scanpy functions w…
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We probably want some sort of badge which people can pin to their approved repositories. Any suggestions how this could look like?
grst updated
11 months ago
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Feature that will be implemented as part of the IO refactoring.
To make things ergonomic, we should before/at the same time, use `GeoDataFrame` for points https://github.com/scverse/spatialdata/issue…
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Mudata should adopt the cookiecutter template for all its benefits. Since there are few PRs open, the disruption should be minimal.
grst updated
4 months ago
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```
alan@pop-os:~/Documents/github/imaging/squidpy_notebooks/ (main) $ grep -r environment.yml
tutorials/tutorial_mibitof.ipynb: "`environment.yml `_."
tutorials/tutorial_seqfish.ipy…
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Just a random note on this: I agree that having SpatialData - level attributes would be super helpful. Beyond that, I think it would be great to be able to annotate coordinate systems - …