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Hi,
Thank you for your contribution with SViper, we are trying to apply it to polish structural variants called using ONT in humans.
I'm encountering an error trying to install SViper in a slu…
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--Hi,
i have compiled seqan libraries with no problem, but then in gyper it failed during the make step:
[ 4%] Building CXX object src/CMakeFiles/gyper_core.dir/graph.cpp.o
In file included from /h…
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Hello, I want to use PROmiRNA for mouse miRNA TSS prediction. While running the program, I bumped into problem like these. I wonder if it is because using the wrong -s file (gene start region gff), an…
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Hello, I am trying to build a database for taxor using ncbi refseq sequences from Prokaryotes, Archaea, Bacteria, Virus and Fungii (almost 50k orgamisms in total).
` taxor build --input-file ../../t…
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**Describe the bug**
Building from 2.6.0 release archive still checks for git.
**Expected behavior**
With the new release, dependencies which were previously downloaded from git are now bundled. …
Uthar updated
4 months ago
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```
porechop/include/seqan/system/file_sync.h: In member function 'bool seqan::File::openTemp(int)':
porechop/include/seqan/system/file_sync.h:337:25: error: call of overloaded 'empty(std::_…
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bowtie1 with versions greater than 1.2.0 are not compatible with Tophat (v2.1.1), reporting things like "./SeqAn-1.4.2/seqan/basic/basic_exception.h:236 FAILED! (Uncaught exception of type St11logic_…
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We need to keep the distributed seqan packages up to date.
- [x] Debian package @mr-c / ?
- [x] MacPorts @rrahn
- [x] FreeBSD @h-2
- [ ] Add todo into trello release cycle.
Operating systems with se…
rrahn updated
8 years ago
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Steal good introductory material from http://docs.seqan.de/seqan/3-master-user/tutorial_ranges.html as suggested by @agurtovoy [here](https://github.com/ericniebler/range-v3/pull/998#issuecomment-508…
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I'm trying to build a docker container with GraphTyper, the pipeline repo and the necessary dependencies (see [current Dockerfile](https://github.com/jmonlong/docker-graphtyper2/blob/master/Dockerfile…