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Any plans to create an R/Bioconductor package (e.g., `epicR`)?
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Proton is going to be our new library that tightly integrates with MeetPlan. It's going to manage absences, optimize work time and create optimized timetables for students.
mytja updated
2 years ago
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The file 'patterns_targets.py' expects an entry for each algorithm in the peak_calling section of the config file, as it creates a list ("PEAK_CALLERS = ['macs2', 'spp', 'sicer']") and loops through t…
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Can we add SICER2 support for ChIP-seq peak calling?
I'm working on a bioconda recipe here:
https://github.com/bioconda/bioconda-recipes/pull/20017
Here are some URLs with more details:
- http…
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Due presumably to the recent fix for patterns population, the ChIP-seq pipeline now silently requires all supported algorithms (macs2, spp, sicer) to have at least one peak calling block in workflows/…
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Morning
I am trying to install on MacOSX (mojave OS)
I used pip install to install all dependencies as detailed in the documentation
when i run pip install epic2
It does not compile. Inste…
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Hi,
I am trying to run epic2-df as you fixed it, but when I run it, it displays me the next log with the following error:
"PyRanges is needed to use epic2-df, but is not included in epic2 to mak…
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which can be detected by SICER. It's a huge peak.
There must be some difference between SICER and epic2. What are those differences?
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Hello,
When I use the option --gaps-allowed I get the error shown below. I've tried a few different values for --gaps-allowed and each result in the same error.
**Command:**
`epic2 --treatme…
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Hello,
I have been having problems with pip install epic2 not succeeding.
## Here's the long error code.
```
Requirement already satisfied: pyrle in /anaconda2/lib/python2.7/site-packages…