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Your work is very useful to single-cell multiomics anlaysis. I have tried your model to run in Google colab L4 GPU with the example BMNC CITE-seq dataset. I have completely run the model for 3 times …
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Hi developers,
Nice method and code/documentation! I was wondering how feasible is to apply ANANSE to single-cell multiomics data (RNA+ATAC):
- For scalability, should I pseudobulk cells by cell…
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Hi, I'm trying to use scGPT for multiomics studies using Single Cell Multiome ATAC + Gene Expression as database for training.
Could you provide a tutorial on how to use scGPT for use in a multiomi…
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Hi all,
I observed a very misleading behaviour with the color scale : the default color scheme is different from one plot to another, which is extremely misleading.
```
h5path = '/home/user/D…
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We expect some Tapestri data. We'll first need to determine whether this means:
- Reuse of an existing sequencing template with no changes, maybe just re-branding/making it available also under the…
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**Describe the bug**
```
Error executing process > 'single_sample_scrublet:SCRUBLET__DOUBLET_REMOVAL:SC__SCRUBLET__DOUBLET_DETECTION_REPORT (1)' …
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I want to integrate my paired RNA data and Protein data as the tutorial described, but encountered an error when I'm going to get the latent space representation after training. The message is
```…
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Hi,
I am currently trying to combine my processed Visium and scRNAseq data using the multimodal run. Following the tutorial I was able to process the data and was able to see the combine feature (G…
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Hi,
SCENIC+ is a very useful software that has brought new insights to my research.
I downloaded the unpublished version of SCENIC+ around January 2023, but then the hard disk of our laboratory …
AIBio updated
2 months ago