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### Description of feature
Make containers and integrate them into the pipeline
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Need to convert the existing docker container into a singularity container and provide it to users.
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### Description
(Sorry if this is not the right place for this issue.)
I've recently got access to France's ADASTRA machine AMD-based HPC calculator.
It is not connected to the internet, so to…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Is your feature request related to a problem? Please describe.
Several of the environments I would like …
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Hi,
Would you consider putting MAPER into a singularity container? I would be the first one interested!
Many thanks,
Justine
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Hi,
The isPcr check `isPcr 2>&1 | head -1 | grep -Po "(?
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Build singularity/apptainer images for this pipeline.
See our [BCCDC-PHL/routine-assembly](https://github.com/BCCDC-PHL/routine-assembly) pipeline for an example of how to build apptainer container…
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Hello, I'm running on Rocky Linux Version 9.0 with Python 3.9.10, and am trying to build an index using Centrifuge 1.0.4.2.
Code:
```
./centrifuge-build \
--threads 5 \
--conversion-ta…
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It would be helpful to have a Singularity container (image) of your package!
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We should try to create a singularity container, containing everything ready to go. This would make it much easier to try out the code. A challenge is on how to create container such a way that it wou…