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Dear @yu-1011 @liusihan @Fefe-W
Thanks for your the great paper!
The EAS eQTL/sQTL summary data download urls in the paper are broken. How to download EAS QTL summary data?
Thanks in adva…
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**For term:** analysisType
**Proposed value:** histone acetylation quantitative trait loci detection
- Definition: (can't find an ontology source, maybe a paper? abbreviated haQTL)
- Source:
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Hello,
I'm trying to re-trace your sQTL sharing analysis, but you've only posted the code for "after" the mashR run (i.e. 'Post mashR pipeline' file). Where can I access the actual code used for th…
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Hi! I'm using leafcutter and FastQTL for sQTL mapping and I generated annotation files with gencode.annotation.gtf and leafviz. I'd like to annotate the significant sQTL/introns I identified. Correct …
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Hi there
I am wondering if taking into account covariates is possible to do with sQTLseeker? You mention that the raw counts shouldn't be transformed in any way. Many datasets, however, have underl…
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@vsvinti asked in the [old repo](https://github.com/jmonlong/sQTLseekeR/issues/6):
> Hi there
> I am wondering if taking into account covariates is possible to do with sQTLseeker? You mention that…
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Hi Jean,
I got the following error while executing sQTLseekeR:
> library(sQTLseekeR)
> setwd("/data/ACSg/sqtl/")
> trans.exp.f="185samples_transcript_count_matrix_transcriptsIn21Kkorygenes_m…
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Hi,
First of all, I want to commend you on creating an impressive tool—great work! I have a few comments and questions that I hope can help clarify some aspects:
1. MAF vs. EAF in GWAS Datasets…
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sQTL analysis with Leafcutter using genotype data from previous Lieber eQTL experiments
- [x] 1. Convert .count files to .junc files
- [x] 2. Cluster introns
- [x] 3. Generate a normalized ratio …
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Hi，
I know that you provide GTEx v8 eQTL and sQTL PrediXcan MASHR models, but what if I want to know how to predict my own data model?
I don’t know if you can provide me with the code to predict the…