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Hi,
I’ve been using EagleC to analyze HiC data, and I’ve encountered some results that I’m having trouble interpreting. The output looks like this:
chrom1 pos1 chrom2 pos2 ++ +- -+ --
chr10 315…
qolba updated
3 months ago
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I've been closely following your recent paper on graph augmentation, which I find quite intriguing. However, I have a few questions. Could you elaborate on the advantages of choosing to augment a pang…
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Hello,
is it possible to see differences in lengths in genes like for structural variations ?
Thank you in advance!
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It will be great if it can show a custom track, like the UCSC genome browser.
Updated:
My goal is to check whether SV break an enhancer or not. Currently, it is not easy to get the location of a …
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Hello,
I am using vgtools deconstruct as:
```
vg convert -g smooth.gfa -p > out.pg
vg index out.pg -x out.xg
vg snarls out.xg > out.snarls
vg deconstruct out.xg -r out.snarls -d 2 -e -a -p REF…
GSgen updated
2 years ago
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Hello, I am currently using FreeHiC in my work and I would like to simulate some structural variations on GM12878. How should I set parameters to simulate multiple different types of structural va…
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Hi,
I've had generally good success assembling chloroplasts with `get_organelle_from_assembly.py`!
One of my samples fails though, with three repeats of the message `Consensus made: (187292-|189…
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Hi,
Thanks for developing this nice tool.
I have two genomes, assembly1 and assembly2. My goal is to use these two genomes as reference genomes, align reads to each of them, and call variants. T…
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### Search component
The search field component is going to be used more than once throughout the application. It is a simple component that consists of a text field and a search icon.
#### Desi…
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Hi，
1) after doing multiple genome alignment (reference, A, B, C and D genome). I want to know the information of SNP and SV in the alignment compared with the reference genome position(like vcf …