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### Description of feature
Dear team,
Sometimes, we don’t have a genome.fasta + gene.gff3 but only have transcriptome assemblies. Could you add a new feature to allow genepal to annotate transcrip…
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### Ask away!
Hi:
It is necessary to use Pinfish to build a non-redundant transcriptome set. Is transcriptome de-redundancy necessary?
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Hello, I'm sorry to bother you. May I know how to do transcriptome prediction now that I only have full-length transcriptome data?
I have seen many articles on downstreaming the data and then using …
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## Bug report
### Expected behavior and actual behavior
I would anticipate that passing arguments such as `--minimap2_args '-k15'` would result in the parameter `minimap2_args` being set to t…
cjw85 updated
1 month ago
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Hi,
I am trying to use GrainGENIE to impute gene expression from my blood RNAseq. I am wondering if there are any requirements for the input blood transcriptome data frame, for example, would the r…
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Hi:
The two data are two different species, so the single cell data are different, how about the possibility of de-matching the two different single cell transcriptome data with the data on the spa…
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Need Uniprot IDs in output for GO enrichment analysis
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Hi!
I am trying to make UMICollapse the default tool in one of the popular RNAseq analysis pipelines -- https://github.com/nf-core/rnaseq/issues/1087.
Not sure if this is covered by #5 already, …
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Hello,
I am trying to download some HMP transcriptomic data, and the links provided in my manifest are giving me some trouble. I have tried downloading from other manifests, such as the example htt…
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Hello!
First of all, thank you for sharing IsoLamp with us.
I see that IsoLamp was created for the targeted sequencing, but I have a small newbie question. I was wondering if it would be possibl…