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Hi!
I am trying to make UMICollapse the default tool in one of the popular RNAseq analysis pipelines -- https://github.com/nf-core/rnaseq/issues/1087.
Not sure if this is covered by #5 already, …
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Hello!
First of all, thank you for sharing IsoLamp with us.
I see that IsoLamp was created for the targeted sequencing, but I have a small newbie question. I was wondering if it would be possibl…
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Hi,
I am trying to use GrainGENIE to impute gene expression from my blood RNAseq. I am wondering if there are any requirements for the input blood transcriptome data frame, for example, would the r…
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Hi, was hoping to get Flair installed. It needs to be via conda-forge/bioconda, as the pip version has a bug that causes flair collapse to fail silently and run forever.
https://flair.readthedocs.…
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Hi,
I am hoping to perform transcriptome assembly using both nanopore long read sequencing data and illumina short read sequencing data. It appears RATTLE only permits the use of long read sequenci…
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Dear Kate,
I am trying to run squish.o but it crashed after hashing. I tries it on both computing cluster and Mac, and the error is the same.
```
/immunopeptidogenomics/squish.o -d file1_transc…
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Need Uniprot IDs in output for GO enrichment analysis
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Where to upload:
And what files to upload:
edsu7 updated
3 weeks ago
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Hi,
Thank you for developing Dorado !
I would like to know if there are different **standard** parameter settings for comparing the reference genome and reference transcriptome of dorado to RNA00…
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Hello,
I'm getting this error:
```
fish: Job 1, 'tools/immunopeptidogenomics/squ…' terminated by signal SIGBUS (Misaligned address error)
```
When running squish like so:
```sh
tools/immuno…