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inodb updated
4 years ago
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Test neutral tumor evolution model described in [Williams et al.](https://www.nature.com/articles/ng.3489) on TCGA data.
**Data**: public MAF files
**Script**: R script, which output regressio…
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Hi, I read the your three research papers, These works will surely promote our understanding of tumor evolution.
- The evolution of lung cancer and impact of subclonal selection in TRACERx
- Clonal…
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Thanks for the great tool!
We have matched primary and metastatic tumor VISIUM (N=25) with NO matched WGS/WES . We would like to evaluate clonal evolution in our data. Can we or should we run all sa…
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Hi
I want to use the copy number information estimated by FACETS to analyze clonal evolution with PhyloWGS. In addition to some basic metrics of each segment, PhyloWGS requires another column called …
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Hello~
We have a scRNAseq result of primary tumor and matched metastasis sample.
Under the assumption that metastasis sample has a higher value of pseudotime and primary sample is root state, w…
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Hello,
When I run infer.clonal.models, an error occurred.
y = infer.clonal.models(variants = data,
cluster.col.name = 'cluster',
vaf.col.names = vaf.col.names,
ccf.col.names = ccf.c…
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I would like to express my sincere congratulations on your recent publication titled "Evolution of immune and stromal cell states and ecotypes during gastric adenocarcinoma progression". Your outsta…
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Hello!
I am running `SDevo` on the command line with the following command:
`java -jar SDevo.jar test_state_clocks_template.xml`
I am using the `xml` template from [here](https://github.com/b…
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