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The twitter sign in works and I can edit 'Manage Profile' and 'Account Settings' but when editing the 'Linked Accounts' it gives the error message of "message":"Invalid or expired token". Not a major …
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## Expected Behavior
tests pass
## Current Behavior
```
- 14:56:11.112 INFO: Search results will be written to query.hhr
- 14:56:11.167 INFO: query.a3m is in A2M, A3M or FASTA format
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Just try to tar xfz the "bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt.tar.gz". But eventually found it creates a file with size more than 1.5T
-rw------- 1 polytide polytide 155572429801…
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Hi there,
Having set up `alphafold` in my machine (NVIDIA GeForce RTX 2080 GPU, ), which I've tested successfully, I'm now coming across the error below running it on a 5586 AA predicted protein (f…
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Dear Authors,
Thank you for your great work.
Alphafold is able to take many chains, while I am not sure what format of input I should use for tfold-ag. for example I have chains like H(…
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Hi,
I am trying to build a custom database. I am getting stuck at this step of the manual (pg 16):
mpirun -np ffindex_apply_mpi _fas.ff{data,index} -i _a3m_wo_ss.ffindex -d _a3m_wo_ss.ffdata --hh…
ghost updated
5 years ago
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Hi Developer,
I have a wild-type protein sequence, and I need to make a Zero-shot variant prediction. Are these two inputs necessary?
BLAT_ECOLX_Ranganathan2015.csv & BLAT_ECOLX_1_b0.5.a3m
If n…
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`make_msa.sh`
```bash
# sequence databases
DB_UR30="$PIPE_DIR/uniclust/UniRef30_2021_06"
```
`DB_UR30="$PIPE_DIR/uniclust/UniRef30_2020_06"` seems to be correct. (ref. Download sequence datab…
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The coverage shown in the MSA plots seems different to the output `.a3m` file. For example for PDB ID `9PAI`, the coverage plot is:
![9PAI_coverage](https://user-images.githubusercontent.com/508737…
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I am trying to generate a3m and hhr files using hhblits 3.2.0. My fasta file sequence length is 53. When I try to execute hhblits with that input file, it shows segmentation fault. For the testing pur…