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1. Build Workflows
- RNA-seq quantification
- RNA-seq variant calling
- ChIP-seq
2. Associated Datasets/Training Data
3. Interactive Tours based on content
4. Share with GTN/GOBLET
5. Galaxy …
cschu updated
8 years ago
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Hi developer,
I am using SortMeRNA to remove rRNA from my metatranscriptome data, and while I expected most rRNA reads to be depleted. The cleaned reads contain 25,721,937 R1 and 25,721,937 R2 reads…
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Hi Chenhao,
we discovered an issue with the contamination pipeline from this repo. Shortly, BWA default seed (k=19) allows 'random' alignments of bacterial reads against the human genome. This issu…
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This often has richer text to be used for NLP
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Hi,
I had apparently very good results -still yet to verify them- scaffolding about 5000 large Pacbio contigs vs a 750MB genome with results inside 1-2 days.
I would like to scaffold ~200,000 much…
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I am running different assemblies using different numbers of SMRT cells with hifiasm v0.13 on ccs hifi reads (corrected reads in fastq).
The sequences generated from homozygote diploid wheat
I have …
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Twitter question from Jo Williams-Newkirk: can we have a function to pick lambda eg. for equal weight on branch length & topology?
Thanks for the question, Jo. If I understand correctly, you're sayin…
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I have 200 metagenomes extracted from stream biofilms. I binned contigs to obtain MAGs and I dereplicated MAGs obtained in all samples to obtain a final pool of MAGs. Finally I mapped reads from each …
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I'm trying to run your code and I saw the requirement is BLASR 2.0 but on the BLASR github page installing legacy BLASR isn't possible. So I installed the lastest version (BLASR 5.1) but that version …
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This issue will collect all feedback submitted via the feedback form at the end of each tutorial
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Results have been [aggregated](https://nbviewer.jupyter.org/github/bebatut/galaxy-training-m…