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In part 4, when running lfsShrink, I am getting this error:
Error in lfcShrink(dds, coef = "BC_subtype_TNBC_vs_HER2", type = "apeglm"): type='apeglm' requires installing the Bioconductor package 'a…
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Hello,
I'm trying to smooth a bsseq object that I contructed with a HDF5 realization backend and I am getting the error "Stop worker failed with the error: wrong args for environment subassignment.…
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I tried to read my own msp file as follows and got the following error.
```
> library(MsBackendMsp)
> sp
kozo2 updated
5 months ago
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- [x] I have fully read the issue guide at https://yihui.name/issue/.
- [x] I have provided the necessary information about my issue.
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I am getting the following error:
dmlt = DSS::DMLtest(bs, group1, group2, equal.disp = FALSE, smoothing = FALSE, BPPARAM = BiocParallel::SnowParam(2))
Estimating dispersion for each CpG site, this…
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It appears that on our cluster the port usage is too restrictive for the socket-based multicore backend. I think the base multicore uses raw connections or some sort of shared memory to communicate wi…
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According to https://github.com/rietho/IPO/issues/44 and https://github.com/rietho/IPO/issues/49 there are new updates to xcms that change the way how multicore processing calls are handled. The resu…
lee-t updated
7 years ago
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Hello,
I have just started using the sesame package to work on my normalization for methylation data and have run into troubles with defining and IDAT directory and the subsequent openSesame step.
…
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# Issue
Hi, I'm running reverse dependency checks on the **future** package, and I noticed that I caused the CPU load to explode on a 96-core machine that I shared with several other users.
I tr…