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Hello,
I'm trying to create a new blobdir with blobtools v2.2.0 with the following command:
`blobtools create --fasta final.purged.fa.PolcaCorrected.fa.masked --taxid 2732485 --taxdump /home/wiren…
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Hello,
I am trying to run blobtoolkit docker container locally but I have some issue with the Viewer part.
Here what I ran:
```
docker pull genomehubs/blobtoolkit
docker run -it --rm --n…
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Blobtools uses blast databases. Right now the README instructions are for all of nt or refseq's prokaryotic subset.
According to https://ncbiinsights.ncbi.nlm.nih.gov/2023/05/16/split-nucleotide-da…
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Dear all,
I activate my btk_env environment, where I have the following version of nodejs-> 14.14.0
Then I launch the command:
blobtools view folder_with_different_json_files
I receive the…
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Hello! I'm having troubles getting the blobtools pipeline (v2.6.5) to run with a local assembly on a slurm cluster. It's unclear to me why this error is happening because I only find replaceHits and S…
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hi
I just installed blobtools and I have this error
.local/lib/python2.7/site-packages/blobtools-1.1-py2.7.egg/lib/interface.py", line 44, in
from docopt import docopt, DocoptExit
ImportError…
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Hi, I am new to use blobtoolikt. I just start following the tutorial provided on the website.
I am able to create the ASSEMBLY_NAME/blob and use a local instance to view the blob. When I add the bus…
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Hi, I have issue filtering based upon taxonomic contigs. Here is the error messages I received:
`WARN: Skipping field 'bestsumorder_phylum', not present in dataset
Traceback (most recent call last…
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Good afternoon,
I have finished creating the dataset and adding blast and BUSCO results with no problems. However, when I tried to run `blobtools view` I had the following problem:
````
Initial…
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Hello,
I am having some issues with running any filter commands (fasta or fastq). After creating the filtered blobdir however, it always errors out with:
Traceback (most recent call last):
F…