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The logic in this function will converts pretty much all datasets to lowercase so if one creates a dataset w/ uppercase name it throws an error saying that it cannot find the dataset when passing a UR…
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The ExportToCellBrowser() function in Seurat version 3.03.9007 fails to build when tSNE coordinates are not present in a Seurat object version 3.0.0.9000.
This is the error output:
> Error in …
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After the markers data is loaded via ajax, you build the table and then explicitly remove the focus from the current object (https://github.com/maximilianh/cellBrowser/blob/master/src/cbPyLib/cellbrow…
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All Datasets > Allen Brain Map: Cell Types Database > 10xWhole Cortex & Hippocampus (2020)
This dataset does not have the correct pairing of the expression matrix and metadata in the public browse…
dvera updated
3 years ago
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This isn't working?
https://humancellatlas.usegalaxy.eu/u/wendi.bacon/h/ucsc-not-working
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I downloaded the SeuratWrappers_0.3.0, but ExportToCellbrowser doesn't exist. Which version of the SeuratWrappers was used in the below documentation?
https://htmlpreview.github.io/?https://github.co…
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I get following error cannot convert float infinity to integer, even after uncommenting - https://github.com/maximilianh/cellBrowser/blob/5207737572a7af58909825bc7e345ab70e474aa3/src/cbPyLib/cellbrows…
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In the Seurat version 4 documentation ( https://satijalab.org/seurat/articles/v4_changes.html ), the **here** link at bottom of the page is broken.
"
ExportToCellbrowser and StopCellbrowser move…
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Trying on an AnnData object that we generate we got the following error:
```
INFO:root:Reading sample names from /private/var/folders/23/wwh84vd95rncnf5mx753cpgh0000gp/T/tmp_1zll3p7/job_working_di…
pcm32 updated
3 years ago
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I found that this error:
```
INFO:root:Filtering for >5 cells then do sc.tl.rank_genes_groups for meta field 'cell_type'
Traceback (most recent call last):
File "/Users/pmoreno/miniconda3/envs…
pcm32 updated
3 years ago