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Hi there,
I'd like to try using circompara2 to map circRNA reads in human genome for my RNAseq project. But since my project has over 1000 samples and we've already done the alignment work for mRNA b…
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Hi,
I am trying NCLscan on some paired-end data and the run finishes with the following message:
> The result will be written to out.result
> See out.result.sam for the final alignment result.
…
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When trying to run KNIFE-1.4 on the testData I ran into the following error:
```
sh: /storage/jbrought/projects/scratch/knife_test/testData/logs/denovo_script_out/3prime_50_SRR1027187_1.fq.out: No s…
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Hi guys,
When I run CIRIquant, `/home/justin/miniconda2/bin/CIRIquant -t 15 \
-1 /home/biodata/GSE135055/2.clean/SRR9856187_1_val_1.fq.gz \
-2 /home/biodata/GSE135055/2.clean/…
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Hello,
The CRAFT software is a power tools for me.
However, I got the following error messages when I want to use fasta file from GENCODE, which is used to find my circRNA.
`Error: The genome file …
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When i execute the script, i obtain this error.
[Sat Nov 5 12:32:46 2016] Extending the seeds...........readline() on closed filehandle CHR_L at /home/aurelien/Téléchargements/UROBORUS/bin/UROBORU…
Nilad updated
5 years ago
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Dear Pro.
I’m reading your paper titled “Genome-wide integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism”. I am very interest…
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Hey,
I am working on a dataset from an experiment that is specifically designed to induce circRNAs. But when I look in the 'library_info.csv', the number of circular RNA reads are very small.
S…
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Hello,
I run starchip on Ubuntu 16.04
I've started to use Starchip-fusion.
I ran it with default parameters.
There is a problem with output files.
After a successful run, out.summary and out.su…
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circompara2 is using tophat, star and bowtie2. why all three? I mean is it necessary to run all three or One of them is enough ???