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Hi
I have able to successfully get the pan-genome, core genome and accessory genome from our isolates. What I am also interested is getting unique genes from each isolates. I am wondering if there …
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Dear fusion catchers,
While building the indexes for fusion catcher we stumbled upon an issue that may be derived from a change in the FTP structure that break some assumptions.
When the organ…
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Dear community,
Thanks for developing this tool!
I am applying both mgatk and maegatk on my own MAESTER dataset.
It goes well with mgatk tenx mode but doesnt give any output from maegatk for m…
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Thank you for the wonderful tool! When I want to make my own GRN, get error. My network can't download ref_genome so
I manual download https://hgdownload.soe.ucsc.edu/goldenPath/mm39/bigZips/mm39.fa…
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Not sure if this is related to the similar post re: pbcstat, but it dumps core on me:
pbcstat *.paf.gz
Program starts
[M::aa_pb] collecting positions from paf file
[M::aa_pb] calculating cover…
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Hi,
I'm encountering errors while using SAW to process my stereo-seq data. Could you please assist me in resolving this issue?
**- Below are the errors:**
[ERRO 20240911-19-28-42 p1060618 loa…
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Potential enhancements of Snippy Streamline to be discussed:
- Quality assessment of reference genome (N50, number of contigs, BUSCO) added to Terra outputs
- additional output column that indicat…
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### Description of the bug
ERROR ~ while scanning a simple key
in 'reader', line 3, column 1:
0.4.8
^ …
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Is it normal that my running command `wgd dmd --cds F1.longestcds.fasta F2.longestcds.fasta -e 1e-8 -o 01-F1_F2_out -n 20` has been running for more than 23 hours?
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### Description of the bug
Hi, I'm trying to use Sarek from the annotation step. I'm using Linux and Conda. Each time I try, it gives me an error like this:
ERROR ~ Error executing process > 'NFCO…