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#### I'm trying to do following to assemble a diatom:
(1) Kneaddata/Trimmomatic for my transcript reads;
(2) Mapping the reads to my unmasked genomes;
(3) Using RNA-Spades for the transcript as…
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Dear Silas,
Last time, I consulted you about the taxonomic and functional profiling for metagenomic data. After check the several papers and blocks, I want to try metaphlan2 and humann2 to get taxo…
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Right now, **response to chemical** is a direct child of **response to stimulus**.
![image](https://user-images.githubusercontent.com/4998871/48035482-03dc4780-e119-11e8-8888-b84e61bf00e4.png)
@…
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Hi,
I saw there are five database in Kaiju http://kaiju.binf.ku.dk/server
I plan to use Kaijun to analysis the shotgun metagenomics data with 100bp pair-ended reads(Hiseq). I am wondering which to …
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I'm not sure if this is the best place to start, but I've been following the conversation on BioJulia/Phylogenies.jl#1 and I thought it might be worth starting a conversation (inspired by @mkborregaar…
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L64 -- reference for bacteria using env DNA
L60 -- ref for smaller animals have spores(?)
L122
L296 -- to Methods? Is it not mentioned there?
L337 - why the "Fig3" in the text?? it .. isn't
Res…
aammd updated
6 years ago
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narrow synonym of metagenomics (Topic)
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/benjjneb/decontam
Confirm the following by editin…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/KonradZych/SIAMCAT
Confirm the following by editi…
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> Version: 1.31.9 (21)
> iPhone 7 Plus Version: 10.3.2
> Wifi
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