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Hi,
I am using ihuman (HumanGEM) genome scale metabolic model. When I use getSpecialistEnzymes and getPromEnzymes, I am getting the following error:
`spec = getSpecialistEnzymes(ihuman);
Erro…
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Following error got popped up when model was loaded in bacArena. (The gapfilling of model was done with LB supplemented glucose. )
"Median lower bound for non-zero and non-Inf exchanges is:**06**"
…
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Hi, jotech, thanks for providing that media file, seems that composition of my media was wrong, now the growth rate is 0.056.
However now the xml file generated is showing valid by sbml validator b…
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Dear Daniel,
I am using Carveme to construct an Eukaryotic model and trying to use one SBML model as universe model from attached zip folder...but getting following error..can you please guide me …
SPD20 updated
3 years ago
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How do we begin annotating the microbial taxonomy with morphological and physiological properties? For example:
* [obligate aerobes](https://en.wikipedia.org/wiki/Obligate_aerobe)
* [facultative ana…
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Dear Daniel,
I have created many models with your amazing source and now I want to check their consistency. Following the paper "Standardizing biomass reactions and ensuring complete mass balance in …
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Hi! I've got a very basic question hoping someone could help me sort it out. I looked through the documentation of cameo and found several main differences between cameo and cobrapy, which could be co…
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Hello every one
I tried to install RAVEN 2.0.3 on matlab in order to use it for metabolic genome scale simulations of microbial communities but I faced difficulties doing so and I was not able run m…
HMbio updated
4 years ago
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When two lines have the same "title" AND "year" AND "authors" keep only one (the first? the most complete?)
Below the three key in ISI and SCOPUS:
- title --> ISI = TI / Scopus = Title
- year -->…
tommv updated
3 years ago
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It seems to me that the ability of a genome (assembly) reference are missing for NCBI, GenBank, and RefSeq. An example for [Escherichia coli str. K-12 substr. MG1655](https://www.ncbi.nlm.nih.gov/asse…