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Hi,
Thanks for the invaluable tools and tutorial resources you provided!
I am currently working with imputed data from the UK Biobank, and I have encountered a challenge regarding the storage si…
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In the current version all datasets are loaded on demand without any caching. However, most of the datasets could fit into the main memory.
see also https://kastnerkyle.github.io/posts/using-pytab…
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Hi,
I have a genotype data with only part of chromosome covered. I am wondering if there is way to calculate SNP-heritability based on the non-consecutive chromosomes?
Thanks,
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This ticket keeps track of existing eQTL fine mapping methods -- please use new comment for additional references so that I can be notified to add here and to my mendeley:
1. Davis, Joe R., et al.…
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Howdy!
Thanks for putting all of your data online.
I can see that the regions file contains all of the regions in the data file, but does the first region correspond to the first sample in the d…
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A user commented on a long run time for BreaKmer, below is the correspondence:
The algorithm has been running for more than 48 hours and have still not finished processing the data. So, I was wonderi…
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Hello Bernhard,
When I run `fur` on my laptop under WSL, I get this message:
```
fur - Failed Blast: Warning: [blastn] Number of threads was reduced to 4 to match the number of available CPUs
``…
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Hi, great work on the ideogram library!
Is it possible to have tooltips in the histogram layout?
Currently, the tooltips work well with the annotation shapes layout, but it would useful to be abl…
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Hi Zachary,
What is your recommendation on minor allele filtering before running saltiLassi? I'm thinking to filter maf