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Dear,
I only want to know which format return the program... I ran several programs to detect de novo insertions, but I want to know if the vcf which I send is overwrite with GT information.
Tha…
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Placeholder for functions supporting transformation of genotypes to/from a sparse matrix representation.
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## Feature request
### Tool(s) or class(es) involved
*GenotypeGVCFs* as of GATK version 4.2.3.0 and newer.
### Description
As of GATK version 4.2.3.0, *GenotypeGVCFs* began representing missin…
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Expected Behavior
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Given a list of clones, retrieve genotype data from multiple genotyping protocols at once, as opposed …
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Hi,
I'm trying to use `gtfilter` (or `Filter GT`) module to set individual genotype calls to missing (`"."`) if they match a certain criteria.
I managed to do so when filtering based on a minimum de…
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Cell attaches a data structure called `Genotype` to each node to allow each node to manage its own state in a decentralized manner.
So if you take any node created by Cell, and query its `Genotype`…
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Hi, I meet the error below when I was running whatshap genotype.
```
======== Writing VCF
Traceback (most recent call last):
File "/home/zicong_zhang/miniconda3/envs/whatshap/bin/whatshap", li…
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Hi, how do I retrieve the genotype column ID for `genotype[x].compute()["probs"]`?
Hoeze updated
5 years ago
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Hi,
Thanks to the authors for developing this method!
I was looking for a method for further confirmation of CNV genotypes. I'm using samplot for visual confirmation, which is very helpful for rare…