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alimanfoo
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anhima
Analyse genetic variation.
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Fix utils
#79
hardingnj
opened
8 years ago
2
Jsfs
#78
hardingnj
closed
8 years ago
0
PY3 support
#77
alimanfoo
closed
9 years ago
1
locate_postion prints to console
#76
hardingnj
closed
9 years ago
2
Add aws
#75
hardingnj
closed
9 years ago
5
Multi-chromosome variant locator
#74
alimanfoo
opened
10 years ago
0
AN array has two dimensions but needs only one
#73
alimanfoo
opened
10 years ago
0
Samplefix
#72
hardingnj
closed
10 years ago
1
LD plot aspect ratio
#71
alimanfoo
opened
10 years ago
0
Improve performance of anhima.ld.ld_prune_pairwise
#70
alimanfoo
closed
10 years ago
0
Locate intervals
#69
alimanfoo
closed
10 years ago
2
Population ancestry likelihood
#68
alimanfoo
closed
10 years ago
1
Fixed typo in chrom spec
#67
hardingnj
closed
10 years ago
2
Adding check for basestring
#66
hardingnj
closed
10 years ago
1
Rename take_ to view_
#65
alimanfoo
closed
10 years ago
0
Extracting samples API flexibility
#64
alimanfoo
closed
10 years ago
0
Use in place operations when packing/unpacking genotypes
#63
alimanfoo
closed
10 years ago
0
Axis hints in docstrings
#62
alimanfoo
closed
10 years ago
0
Subselection routines in anhima.loc support multiple arrays
#61
alimanfoo
closed
10 years ago
1
Addtped
#60
hardingnj
closed
10 years ago
5
Added check if a basestring
#59
hardingnj
closed
10 years ago
4
Impute inheritance
#58
alimanfoo
closed
10 years ago
0
Mendelian errors on sex chromosome
#57
alimanfoo
opened
10 years ago
0
Locate position, locate positions
#56
alimanfoo
closed
10 years ago
0
Modify pack/unpack diploid such that 0 encodes ref/ref
#55
alimanfoo
closed
10 years ago
0
Bug in anhima.gt.pack_diploid for higher alleles
#54
alimanfoo
closed
10 years ago
0
Support array-like arguments throughout
#53
alimanfoo
closed
10 years ago
0
Document dependencies
#52
alimanfoo
opened
10 years ago
0
Multiallelic Mendelian errors
#51
alimanfoo
closed
10 years ago
1
Sparse genotypes
#50
alimanfoo
opened
10 years ago
1
Transform genotypes to per call allele counts
#49
alimanfoo
closed
10 years ago
0
Pedigree phasing
#48
alimanfoo
opened
10 years ago
0
Diploid Mendel errors
#47
alimanfoo
closed
10 years ago
0
Diploid optimisations for anhima.gt.is_het etc.
#46
alimanfoo
closed
10 years ago
0
Adding mendelian error code
#45
hardingnj
closed
10 years ago
1
Add option to normalise total doubleton counts by number of samples
#44
alimanfoo
closed
10 years ago
0
Fix alignment of total counts in anhima.f2.plot_f2_fig
#43
alimanfoo
closed
10 years ago
0
Option to apply variant query when loading from HDF5
#42
alimanfoo
closed
10 years ago
1
Drop heatmap plot of shared doubletons
#41
alimanfoo
closed
10 years ago
0
Break doubleton sharing functions into separate module
#40
alimanfoo
closed
10 years ago
1
Break site frequency spectrum functions into separate module
#39
alimanfoo
closed
10 years ago
1
Y limits for plotting shared doubleton counts
#38
alimanfoo
closed
10 years ago
1
Break apart plotting functions for shared doubleton counts
#37
alimanfoo
closed
10 years ago
1
Normalise shared doubleton counts by number of distinct pairs
#36
alimanfoo
closed
10 years ago
1
Write genotypes in TPED format
#35
alimanfoo
closed
10 years ago
2
Subsample chunks (anhima.h5)
#34
alimanfoo
closed
10 years ago
1
Haplotype bifurcation plots
#33
alimanfoo
opened
10 years ago
0
Add see also from anhima.mds functions to pairwise distance function
#32
alimanfoo
closed
10 years ago
0
Unpack multiallelic variants
#31
alimanfoo
opened
10 years ago
0
Convenience functions to find fixed differences between populations and private variants
#30
alimanfoo
opened
10 years ago
0
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