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I am running HISAT 2.0.5 and working with the Arabidopsis thaliana annotation [Araport11](http://www.arabidopsis.org/download/index-auto.jsp?dir=%2Fdownload_files%2FGenes%2FAraport11_genome_release), …
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Hi all, I'm running HISAT2 with the GRCh37 genome and SRR493376 data. and I get the error `(ERR): hisat2-align died with signal 11 (SEGV) (core dumped)`.
You can download the SRA data from this URL…
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Hi I hope some help me I'm a newbie in bioinformatics.
I already built the index and when I run the program I get this error
Error: Encountered internal hisat exception (#1)
Command: hisat2_home/hisat…
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Dear Daehwan,
I stumbled across two cases (see below) where I am unclear about whether I either incorrectly interpret the tags or they are indeed inconsistent. Hisat2 version and invocation were:
``…
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On the cluster enter guix environment and build pipeline
```
guix environment -l guix.scm
./bootstrap.sh ; ./configure
```
summary output
```
$ guix environment -l guix.scm
$ ./bootstrap…
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When i use the command：./nextflow run nf-core/rnaseq -profile docker --input /home/young/miniconda3/bin/samplesheet.csv --genome GRCh37，it report the error that .
The same error when i use the comman…
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Hey Guys,
I came across what may/may not be a bug in Topiary that specifically pertains to the use of NetMHC, but not other callers that then call NetMHC (NetMHCcons). I ran:
```
jpf-mbp:test johnfi…
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Investigate the performance of parallelable tasks (those can run with more than 1 thread, controlled by `num_process`) under dataset `Wallace_2020_JEC21` and dataset `Woolstenhulme_2015`.
The tasks…
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Hello everyone,
I am following the tutorial https://github.com/griffithlab/rnaseq_tutorial/ .
Since, Hisat requires huge RAM, I am getting message "out of memory". which other splice aware aligner…
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run command:
hisatgenotype --base hla --threads 4 --bamfile SRRxxxxxx.bam
BAM file is generated previously by STAR 2.7.0
--------------------Python error trace message:
Traceback (most recent cal…
nikyk updated
2 years ago