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Please provide as much information as you can:
* **Suggested term label:**
histone kinase activity (H2A-Y142 specific)
* **Definition (free text)**
Catalysis of the transfer of a phosphat…
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Position S139 is on H2AX, and not H2A (which is shorter)
So I changed the label to histone H2AXS139 kinase activity and the definiton to mention H2AX.
@colinlog
Thanks, Pascale
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Hi,
Directly using the sample data in folder custom_data_files to run run_bichrom.py will result in an error message as follows:
```python
python run_bichrom.py -training_schema_yaml ../custom_da…
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Hi,Dohoon!
I'm training on the latest version of chromoformer-1.1.1. But I still face some problems.
I want to use my own data (5 histone modifications) for training. Since I only used 5 HMs, I ch…
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Hi,
I am running AA_stat on open search results of histone dataset. For this reason, I have fewer PSMs than I would get with a total proteome experiment, so the warning is perfectly fine. However, …
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There may perhaps be a need to have an overarching BP term somewhere between the BPs GO:0016070 RNA metabolic process and GO:0006366 RNA polymerase II that can house the 'RNA polymerase II cycle' …
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- Describe the issue or question:
Batmass-IO version 1.28.12
WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by org.nustaq.serialization.FSTClazzInfo…
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I want to add a new cross linker (PhoX). This is what I added to the conf so far but I am not sure it is correct/the best way to do it.
```
crosslinker:SymetricSingleAminoAcidRestrictedCrossLink…
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**Is your feature request related to a problem? Please describe.**
We are interested in adding information on histone post-translational modifications to our graphs. There are various things that we…
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- [x] NTR: histone deubiquitinase activity
to replace BP GO:0016578 histone deubiquitination.
Definition:
An isopeptidase activity that cleaves ubiquitin from a histone to which it is conjugated.…