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Hi,
I tried running the example data with the following code and got the following error.
Thanks
Robbie
```
set -e
tmp_dir=$(mktemp)
rm ${tmp_dir}
mkdir -p ${tmp_dir}
cd ${tmp_dir}
…
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Hi!
I was wondering if anyone can suggest a tool to convert HLA-LA result text files into VCF/PLINK/SNP2HLA format.
Thanks!
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Hi, I wonder if I could feed the bed, bim and fam files output from SNP2HLA into HIBAG to get the HLA class I and II typing.
Thank you in advance!
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As in the title: when custom HLAs are used the mixMHC2pred is not run. I have both HLA class I and II defined in the file. I suspect this may be because it is dependent on HLA_HD but I'm not sure.
…
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Hello, if the HLA allele of LossAllele column matches the HLA allele of HLA_A_type1 column, should the LOH be determined based on PVal_unique
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# Vvardenfel
### Hla Oad
- [x] Hla Oad_Ebonheart
- [x] Hla Oad_Gnaar Mok
- [x] Hla Oad_Seyda Neen
### Khuul
- [x] Khuul_Fort Frostmoth
- [x] Khuul_Dagon Fel
- [x] Khuul_Gnaar Mok
### Eb…
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I've created initial implementation for Blackmagic firmware and implemented a basic OpenOCD HLA interface driver for blackmagic probe.
On the probe itself, I've extended the remote.c interface with a…
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Hi Wanson, I found you again here.
I have generated HIBAG files and ran --hla2hped without any output; what went wrong?
My data looks like these,
==> hla-A.txt hla-B.txt hla-C.txt hla-DPB1…
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Hi Christophe! Thank you for making this tool available.
I have two questions about it: Did you calculate the Grantham distance for the loci that Pierini F & Lenz TL did not analyze (or did not inclu…
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Hi,
I want to use polysolver for HLA-typing, thank you very much for developing the conda version of polysolver! (I am not root user so cannot install it using docker as suggested by Broad Institute)…