-
when i run :
```
$ ./sc_hla_count_linux -b outs/possorted_genome_bam.bam -c outs/filtered_feature_bc_matrix/barcodes.tsv.gz -o ./outs -d HLA/IPDIMGT/download
```
report it …
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Dear authors
I would like to generate a customized reference. Unfortunately I get an error which I do not understand.
`(rnaseq) [staedlen@rkanc014is01 my_rnaseq]$ arcasHLA customize -G hla.tsv …
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Hi,
I want to use polysolver for HLA-typing, thank you very much for developing the conda version of polysolver! (I am not root user so cannot install it using docker as suggested by Broad Institute)…
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Hi Wanson, I found you again here.
I have generated HIBAG files and ran --hla2hped without any output; what went wrong?
My data looks like these,
==> hla-A.txt hla-B.txt hla-C.txt hla-DPB1…
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Hi,
The command `arcasHLA reference --version` fails for specific versions (it seems like every reference > `3.34.0`).
```
arcasHLA reference --version 3.35.0 -v
----------------------------…
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Hi,
I tried running the example data with the following code and got the following error.
Thanks
Robbie
```
set -e
tmp_dir=$(mktemp)
rm ${tmp_dir}
mkdir -p ${tmp_dir}
cd ${tmp_dir}
…
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Hi:
When i run the HLA_frequencies.R to get Geographic maps of HLA data ,there are different errors before and after two runs. Can you give some advice?
[error1:]
Error in code line:
hla.is…
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Hi Jonassibbesen !
In add_haplotype.sh of making pantranscriptome for 1kg_all_af001_imgt_hla_p10k_noB258_noN_a100_gencode100 :
-using this command line : "aws s3 cp s3://vg-k8s/users/jsibbesen/vgr…
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Teď funguje tak, že máme
```python
@dataclass
class AntibodyMatchForHLAType: # TODO: možná lepší název bude AntibodyMatchForAssumedHLATypes
assumed_hla_types: List[HLATypeWithFrequency]
…
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Hi
Can you explain how you calculate CDS distance, CDS consensus and CDS mutations?
Thanks