-
With updated versions of the BDGenomics pipeline (snap, adam, avocado), use a small / medium / large genome to validate the new images and the orchestration scripts. We'll compare these results with t…
-
see https://github.com/dib-lab/kevlar/pull/54#issuecomment-289617252 - 30 minutes to build a 3.5 GB nodetable.
-
Subworkflow to profile your input:
- N50
- N90
- L50
- GC content (per scaffold and globally)
- Raw counts of G,C, T, A
- Scaffold length and size
- Gap count and summary (avg gap length across…
-
Hi,
I am trying to fine-tuning the model with the command below.
`singularity run --nv ~/software/singularity/helixer.sif fasta2h5.py --species Ac --h5-output-path Ac.h5 --fasta-path Ac.fa`
`sing…
-
Maybe we've lost the csi index of BAM with Galaxy 20_05
I don't understand, maybe this is a small issue because all the code seems to be here (galaxyproject/galaxy#9570)
When I create a BAM (with …
-
I have been facing several issues while running the snpArcher pipeline on a SLURM cluster,
Incomplete Files and --rerun-incomplete Flag: Initially, I encountered incomplete output files being gener…
-
Right now the suffix trees produced from the whole genome of 400m characters are too large to be displayed entirely at once in the web UI.
How do we query the DB to get just part of the suffix tree…
-
Hi,
I've been using yacht as a way to reduce false positives in sourmash, and I wanted to ask if it's possible to update the tool to incorporate the latest features from _sourmash_plugin_branchwate…
-
I am using hifiasm with default parameters to assemble one plant genome (HIFI sequencing and HI-C) with estimated genome size of 330MB. However, I got an assembly with size of nearly 400MB. Particular…
-
Trying to get predictions using the ReadME tutorial and getting the below error during run_prediction.py
```
09/23/2024 21:12:42 - INFO - __main__ - ***** Running prediction *****
09/23/2024 2…
nal10 updated
3 weeks ago