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KoslickiLab
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YACHT
A mathematically characterized hypothesis test for organism presence/absence in a metagenome
MIT License
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PR for MAG fishing
#122
bioinfwithjudith
opened
1 month ago
6
Fixing Zenodo Record API Limit
#121
kvnthomas98
closed
3 months ago
2
YAC-26 insert file
#120
ShaopengLiu1
closed
3 months ago
2
Adding tests for yacht convert (#116)
#119
mahmudhera
closed
1 month ago
3
Set default parameters to be what was best on the CAMI data
#118
dkoslicki
opened
4 months ago
0
Add version
#117
chunyuma
closed
4 months ago
2
Cover yacht convert with tests
#116
mfl15
opened
5 months ago
0
Fix issue114
#115
chunyuma
closed
5 months ago
2
Error in yacht convert
#114
OliverBryan
closed
5 months ago
6
Yacht usage article
#113
mfl15
opened
5 months ago
2
Update LICENSE.txt
#112
mfl15
closed
2 weeks ago
3
#67-training-doesnt-like-sig-files
#111
mfl15
closed
5 months ago
2
Performance testing
#110
mfl15
opened
5 months ago
0
Create wiki documentation - Developer docs
#109
mfl15
opened
5 months ago
0
Optimize code speed
#108
mfl15
opened
5 months ago
0
Auto-handling of gzip, tar.gz, zip, xz compressed FASTA/FASTQ files
#107
mfl15
opened
5 months ago
0
Make a test of using pre-trained data
#106
mfl15
closed
5 months ago
2
Error working with GTDB database bug
#105
mfl15
closed
5 months ago
5
fixed a typo in README.md
#104
chunyuma
closed
5 months ago
1
Error working with GTDB database
#103
OliverBryan
closed
5 months ago
2
YAC 97 -Update the config.json of the pretrained databases to path where it is located
#102
kvnthomas98
closed
5 months ago
3
Resolving #44
#101
mahmudhera
closed
5 months ago
3
update yacht time usage
#100
ShaopengLiu1
closed
5 months ago
2
Profiling example
#99
mfl15
closed
5 months ago
5
PR template
#98
mfl15
closed
5 months ago
2
Yac 85 linter
#97
mfl15
closed
5 months ago
6
YAC-64-tests
#96
mfl15
closed
5 months ago
2
Run yacht with Docker (Dockerfile)
#95
mfl15
closed
5 months ago
2
Adding more tests
#94
mfl15
closed
5 months ago
2
Fix codesmells
#93
chunyuma
closed
6 months ago
2
bug YAC-98 accepts .sig file now
#92
bioinfwithjudith
closed
5 months ago
7
Yacht training takes ~90min for GTDB r214 representative
#91
ShaopengLiu1
closed
5 months ago
2
Integrate the `yacht sketch` functions
#90
chunyuma
closed
6 months ago
4
New tests
#89
mfl15
closed
7 months ago
3
Update runTest.yml
#88
mfl15
closed
7 months ago
2
Make a test of using pre-trained data
#87
dkoslicki
closed
5 months ago
0
bug: `os.exit`
#86
dkoslicki
closed
7 months ago
1
When downloading from Zenodo, the config files need updated
#85
dkoslicki
closed
5 months ago
2
Close YAC-38
#84
ShaopengLiu1
closed
7 months ago
2
update README.md for a mistake
#83
chunyuma
closed
7 months ago
2
YAC-13 Fix
#82
bioinfwithjudith
closed
7 months ago
2
Bug yac 13
#81
bioinfwithjudith
closed
7 months ago
2
Update README.md
#80
dkoslicki
closed
7 months ago
4
Repalce PR #77 Update doc strings
#79
chunyuma
closed
7 months ago
2
delete the temp file
#78
chunyuma
closed
7 months ago
2
Update doc strings
#77
dkoslicki
closed
7 months ago
3
Tests check coverage
#76
mfl15
closed
7 months ago
2
Fixing test_get_info_from_single_sig
#75
mfl15
closed
7 months ago
2
Adding genome sketching capabilities
#74
druvus
closed
7 months ago
1
Addition of new download scripts and improved .gitignore file
#73
druvus
closed
7 months ago
1
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