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**Submitting author:** @Brauckhoff (Tim Brauckhoff)
**Repository:** https://github.com/Brauckhoff/biopixR
**Branch with paper.md** (empty if default branch):
**Version:** 1.1.0
**Editor:** @fabian-s
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/microbiome/iSEEtree
Confirm the following by edit…
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Hello, I previously ran mia (version 1.2.7) and had no issue when running the function estimateDiversity from a tse construct using biom file. Note that I followed the tutorial https://microbiome.gith…
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After we moved similar functions under same manual page, we lost some "hidden" parameters that were described under `...`. That is because one manual page can have only one description for each parame…
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I am using nasal microbiome data for the deseq analysis in Phyloseq. This is not 16s data, but very similar. It is called IS-pro and instead of sequencing the 16s region it measures the length of 16s-…
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tool_id=toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs/mothur_classify_seqs/1.39.5.0
Test history https://usegalaxy.org/u/jen-galaxyproject/h/imported-from-archive-training-16s-rrna-sequenci…
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I'd like to try out songbird but I have a lot of data to prototype.
Creating intermediate files really puts a bottleneck in my workflow and was wondering if I would be able to do the following:
1…
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hello all,
thanks a lot for the wonderful package,
I'm trying to use loadFromMetaphlan to create a TreeSummarizedExperiment with Metaphlan 4 output.
"file_path
Error: 'file' must be a singl…
J5886 updated
2 months ago
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This issue will collect all feedback submitted via the feedback form at the end of each tutorial
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Results have been [aggregated](https://nbviewer.jupyter.org/github/bebatut/galaxy-training-m…
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Support for metagenome assembly of long-read sequence data
Over the past several years, the JGI has increasingly supported metagenome sequencing with the PacBio
platform because library preparation me…