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Hi,
command,
mixcr exportClones -vIdentityPercents -vBestIdentityPercent -dIdentityPercents -dBestIdentityPercent -jIdentityPercents -jBestIdentityPercent test.contigs.clns clones.tsv
clones_IG…
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Hello Sebastian and co.
Thanks a lot for designing this nice package to understand the nature of TCR repertoire and potential expansions. My goal with the current airr data I have is to compare dif…
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Hello,
I have attempted to use TRUST4 to assemble my SE RNAseq data and have learned the basics of how it works. However, I am still confused about the final report.
In the .report file, I notic…
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Chère Juliana,
J'ai mis pour l'instant les fichiers coresspondants à partis et vidjil dans :
lymphoClone2/Results/Cluster_Content/
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What data format do you have in example/COVID/COVID_1.zip? How do I get from my MIXCR output into a format suitable for fastBCR?
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Hi,
I'm using scRepertoire v 2.0.0 and the `combineTCR()`. With this package version there are the gene columns "v_gene", "d_gene" and "j_gene" and the "chain" column. However, I think there should…
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Hi,
I have a matched RNA-seq / WGS - seq whole-blood dataset with other data indicating high lymphocyte burden. I used mixcr analyze shotgun as recommended with both datasets.
I have a general…
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## 🐛 Bug
Hi, I keep getting an error trying to load any MiXCR output to Immunarch. The message "Samples found in the metadata, but not in the folder" is not helpful, but the issue I think is that I…
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Hi @ncborcherding thank you so much for developing scRepertoire this is a really great tool!
Soon I'll be working with BCR + scRNA data and I would like to use MiXCR for the analysis of clones tree…
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Hello,
I had a question regarding the MiXCR's defaut library reference sequences. I noticed there were some differences in terms of list of alleles for specific v genes and what v genes were inclu…