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Hello, I'm trying to run gem-mapper (from the hic tree) on bisulfite data.
I made the index with the "-b" flag.
Here is my command:
` ./bin/gem-mapper -I Homo_sapiens_assembly19.gem --3c --rest…
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**Describe the bug**
`neva new` generates code using the `net` keyword.
**To Reproduce**
Steps to reproduce the behavior:
1. Start a new project
2. Call `neva run src`
3. See error
```
3:1…
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**Describe the bug**
In `https://github.com/aidenlab/juicer/blob/master/CPU/juicer.sh`, it use ` if [ -z "$genomePath" ]` to judge whether the genomePath is set or not , but even you set the unexi…
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For bedgraph files:
Bedgraph files when loaded give the following error:
**Could not load resource: IGV has not been initialized error on loading a bedgraph file.**
When gzipped, this error goes away…
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Get rid of empty Layer 0.
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### DB Selector
Both
### Affected DBID(s)
All of the stated SAM's
### Summary of Changes
Many of the missiles in the game use SARH and I have never understood this unless of course its to simplif…
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**Describe the bug**
A issue with the build/analyzer causes types in Component IO not to be fully qualified. The error is as specified in the title. It comes up when you use an external component th…
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Get Error: null
Possibly trying to write to a directory that doesn't exist?
java.io.FileNotFoundException: /Users/nchernia/juicebox/JuiceboxStatesForExport.xml (No such file or directory)
at java…
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On certain systems (e.g. Google Colab), awk will round the values of longs / use scientific notation. This results in the index_by_chr script returning an unusable file.