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Pypet: http://pypet.readthedocs.io/en/latest/manual/introduction.html#install
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A dataObject such as a neuron may have a variety of properties. Currently, in order to look up what evidence is associated with a given object, you will have to ask for each property in turn, and loo…
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If this issue is intended to be a *bug report*, please fill out the following:
**Expected behavior**
Using 0.9.3 image in docker, but whenever I try to run the simulation with command run.cmd -d 2…
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These tests should use the NeuroML2 python library to read c302 and compare key features to the contents drawn from PyOpenWorm to be sure they are consistent.
Depends on #27 being completed.
travs updated
4 years ago
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There have been security warnings raised on org.neuroml.export and org.geppetto.core for a while related to some jackson libraries, e.g. https://github.com/openworm/org.geppetto.core/network/alert/pom…
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There is information on the neurotransmitters in each C elegans neuron here:
[A cellular and regulatory map of the cholinergic nervous system of C. elegans](http://elifesciences.org/content/4/e12432v…
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This issue can be closed when two tests of connectivity are implemented and incorporated into the test suite using SciUnit
- [ ] Make a README.md for the data we find [here](https://github.com/open…
travs updated
7 years ago
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Update the HDF5 to be compatible with the latest version of Geppetto for:
- [ ] wormsim mechanical
- [ ] c302
Example of what may have changed (the "aspect" is gone):
Entries like `C302.muscle[0].m…
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I propose that every language that we support provide a basic set of routines to help the user create WCON data. These routines would include:
* A function to create each structure (arena, softw…
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We need to move fetchVariableQuery via neo4J (https://github.com/VirtualFlyBrain/geppetto-vfb/blob/solr-queries/model/vfb.xmi#L625) over to SOLR (started here: https://github.com/VirtualFlyBrain/geppe…