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Hi there,
I'm just wondering if you had tables of cell type calls for each species corresponding to the counts matrices you have on GEO somewhere.
Awesome work! thanks!
Matthew
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Hello Author,
I made vcf including SNV & indels. It seems only SNVs written in ssm_data.txt. Can you suggest me how I change my indel& SV data into phylowgs input?
Thankyou,
James
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Hello!
I'm trying to use pglmm to understand if bacterial community phylogeny is related to the plant host species phylogeny that the bacterial communities were sampled from. However, I'm encounter…
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evg16 updated
2 years ago
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Now on days, knowing species number and delimitation of species is a essential task for biodiversity purposes and/or conservation issues. It will allow to identify conservation units and endangered sp…
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I have already sequenced a batch of yeast data and would like to use Haplocheck to detect contamination in the WGS data. I note that the examples mentioned in _Contamination detection in sequencing st…
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The documentation says `study_doi` is supported, but this seems to have been changed to `studyPublication` by OT.
`studies_find_studies(property="ot:study_doi", value="http://dx.doi.org/10.1600/036…
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I used the "tree" option with backbone.nwk and the alignments of 12 genes including 2538 species. I always got error message "In cluster species/output/udance/3, 1 gene tree(s) with lower than 0.80 me…
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Presenter: Maureen Stolzer
Link: http://www.cs.cmu.edu/~durand/Notung/
Brief description: Notung is a gene tree-species tree reconciliation software package that supports duplication-loss (DL) a…
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- explain the nature of the problem you were trying to solve
- explain the information you needed (a tree, the alignments, information on how those were derived, etc...)
- what was actually linked t…