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An interesting point was raised by Aya: how can we be sure the plasmid contained in the mother cell will be transferred to the minicell?
It was then suggested that we look at the iGEM Vilnius-Lithu…
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Hello, not sure if this is the right place to ask this question, but I will give it a try. As regards the publication i: https://doi.org/10.1101/213470, have you added the SynMock plasmids directly in…
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Hi, I was trying to run spades in linux, but got following error:
== Error == system call for: "['/gpfs/home/user/.conda/envs/tormes-environment/share/spades-3.13.0-0/bin/spades-hammer', '/gpfs/da…
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pSB1C3 has been onboarded at TWIST with two insertion sites. The naming of the plasmids within the packages should reflect this.
- pSB1C3 with the BioBrick prefix and suffix
- pSB1CX (Name TBD) wi…
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Hi, I tried to build the ICEfinder container today, but ran into the following errors:
1) I had to remove the first line from icefinder-v1.0-local.def (although the ICEfinder_linux.tar.gz exists)
`W…
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When I click on the main bionet logo, my favorites come up (which I still don't know how to remove).
I click on the KG_box1, the location comes up, but I can't actually click on it from there to s…
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Is there a command line functionality to extract circular sequences, i.e. plasmids?
There is a tool called `recycler` that is doing exactly this thing, but it is quite slow.
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please update the the docker run parameter,
the docker executable: plasmidID.sh not plasmidID
docker run -v $PWD:$PWD -w $PWD buisciii/plasmidid plasmidID.sh \
-1 test/KPN_TEST_R1.fastq.gz…
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This is just a short recap of the meeting
# 01/04/2021 Meeting - Recap
We all agreed minicells had a lot of potential and would be great to include in our iGEM project.
They have great potentia…
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### Ask away!
When i run v1.3.1 without providing a reference, I see a "multiple sequence alignment" (MSA) even if there is only one plasmid in the "group".
When i run v1.3.1 and provide a full re…