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Beginning with sequence-based searches of the literature via PaperBLAST and using the sequences acquired from PomBase, UniProtKB
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Or maybe an error?
(From https://github.com/pombase/canto/issues/2802#issuecomment-1970616095)
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UniProtKB:Q9UTR8 | red1 | part_of | GO:0000178 exosome (RNase complex) | ECO:0007826 IEA | GO_REF:0000118 | PANTHER:PTHR21563:SF3 | 284812 Schizosaccharomyces pombe (strain 972 / ATCC 24843) | Tr…
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Found in my pending file:
Dear xxx,
Thanks for getting in touch. Usually we can reopen the session for you to add curation.
Unfortunately we cannot capture quantitive copy number in Canto y…
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Semi-recently pombase updated their `pombase.yaml` dataset metadata entry that we use to drive the pipeline to include uncompressed gpad/gpi files. The gaf entry is unaffected.
To illustrate:
```
…
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We need to load the ORCID of the session approver to JSON so we can load into Chado:
- https://github.com/pombase/pombase-chado/issues/1013#issuecomment-1774361202
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I use this AmiGO a lot, but its use is restricted by the fact that you can only use it on whole genome annotation, not on lists.
I think it uses a java library and so presumably for us, would no…
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In working with a bunch of ontologies, I found a few more URIs that could potentially be mapped to CURIEs, as shown below:
> -
> SNOMEDCT_US: http://snomed.info/id/
> -
> SNOMEDCT_US: http:/…
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Supply URLs for PomBase data sources.
for these
PomBase phenotypes https://www.pombase.org/downloads/phenotype-annotations
GO data. https://www.pombase.org/downloads/go-annotations
cerevisia…
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https://www.pombase.org/reference/PMID:23813957
Any1 Ub ligase adaptor->Aat1 amino acid transporter