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Dear Greg - thanks for your continued work on this and for this follow up paper with updated pipeline. I'm the lead author of [Hermida et al. Nat Commun 2022](https://www.nature.com/articles/s41467-02…
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use the tophat junctions.bed files as the interval for the RNA-seq analysis #maketracktable
displayMode="COLLAPSED"
![igv_snapshot4tracktable](https://cloud.githubusercontent.com/assets/13783075/2…
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1. A comparison of automatic **cell identification** methods for single-cell RNA sequencing data
Article Link: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1795-z
2. Challen…
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Context: I have paired-end RNA-seq data from a stranded library preparation protocol. I would like to identify differential splicing events between two groups (including cryptic exons). Is it possible…
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OGS v1.2 is here: https://i5k.nal.usda.gov/bio_data/836678
The community wants to review these assemblies, and having the OGS on each haplotype will likely help. The OGS will need to be remapped fi…
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翻译任务 [simpleSingleCell:A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor](https://www.bioconductor.org/help/workflows/simpleSingleCell/) (R package version 1…
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Hello!
I am enjoyed on the abilities the sleuth provides on RNA-Seq data analysis. So I try to use it in my current project. I have a large dataset, where from I am interested in looking the DE for 1…
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