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Relative to https://github.com/mc2-center/data-models/issues/49 and https://github.com/mc2-center/data-models/pull/66
Draft of the MC2 data model dictionary, using GitHub pages deployment, is here:…
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For example, I have different time point scRNA sequencing data to explore the clonal structure of these samples. How do I choose the bulk DNA time point? And scRNA-seq and bulk DNA sampling from diffe…
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Dear EcoTyper team,
Hi, all! Hope you been well and thanks so much for sharing amazing tool.
I was following tutorials using new TCGA data with in-house scRNA-seq dataset.
Initially, I run Tuto…
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Hi @hxj5 , I have a question regarding 10X 5' scRNA-seq data.
For 5' sequencing, the read containing cell barcode and UMI contains part of the transcript https://kb.10xgenomics.com/hc/en-us/article…
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https://mp.weixin.qq.com/s/P9h_YTMsSgDPniPZqgn-yg
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It seems that would be a powerful tool for the scRNA-seq data.
One of main concern is that acquiring reliable variants set for scRNA seq is challenge due to the high false positive and the limited se…
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With Azimuth annotations available, the cell type annotations should be made more visible.
Suggested layout:
![image (32)](https://user-images.githubusercontent.com/1216518/142284413-eb59d274-a7…
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In the current version 2.1.2 of the scATAC analysis pipeline, some samples encounter SIGNALS errors during merging due to high memory usage.
**This issue will be optimized in the next version.**
T…
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I've been using `ProjecTILs` and the CD4/CD8 human T cell reference atlases in some scRNA-seq work lately and it has been very useful for us. I wonder whether you or @ncborcherding (via https://github…
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Hi,
I think a file is missing here, either it was not added to the repo or it was moved and its
location was not updated.
In [scRNA-seq/R-scripts/seurat_clustering.R] on line 111,
I think th…