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Hi,
I am processing an scRNA-seq dataset containing 14 samples. For each sample, I performed the standard QC filtering based on nFeatures and mitochondrial gene percentage, followed by the identifi…
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The current directory structure for the scRNA module set looks something like this:
```
training-modules/scRNA-seq$ tree
.
├── 00-scRNA-seq_introduction.md
├── 01-normalizing_scRNA-seq.Rmd
├── 0…
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Hi,
i am trying to run Cytospace on spatial transcriptomics on Count matrices encountering the **illegal hardware instruction**.
Iam running cytospace on Macos M3 Max Chip. highly appreciate any…
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Hello salmon team! @jamorrison and I were looking through the code and seeing how best we could contribute a new single-cell RNA-seq technology. Our approach (STORM-seq https://www.biorxiv.org/content…
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Hi,
I have used ST data from a study, but because of the lack of corresponding scRNA-seq, I have to use my previous scRNA-seq integrated datasets for reference.
By using this method, I get a set …
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Hi,
I am very interested in using Dendro for my scRNA-seq dataset which was generated using plate-based Celseq2 method.
I have 4 different conditions, each 3 plates of 384 cells. How does the cell i…
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Hi, I have finished scRNA-seq cell annotation in python with standardized pipeline.
I only want to compare the metabolism activity between 3 subtypes.
I want to know if
1.I should convert the h5ad…
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Hi
I recently used scMTNI for my scRNA-seq data analysis. I have few question about it.
The first question is about the input gene expression table. I saw one github discussion about it, but I a…
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**Project:**
Characterizing the transcriptome of individual cells is fundamental to understanding complex biological systems. Recent developments in single cell RNA sequencing (scRNA-seq) technologies…
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@songeric1107
The colors should be consistent for the cell types between P2 and P7 for the following datasets:
- P2, mouse, scRNA-seq, cochlea (Hertzano/Ament) and P7, Mouse, cochlea, scRNAseq (H…