-
### Operating System
Other Linux (please specify below)
### Other Linux
RedHat 7.9 (Maipo)
### Workflow Version
v2.9.0-gd9e8593
### Workflow Execution
Command line
### EPI2ME V…
-
I have run just the following commands
mmseqs createdb x_protseqs.fasta x_db
mmseqs cluster x_db x_clust tmp --min-seq-id 0.9
mmseqs createtsv x_db x_db x_clust x_clust.tsv
My input x_protseq…
-
![alignment](https://user-images.githubusercontent.com/13358837/46524084-490f1e80-c8ba-11e8-9a69-a669aa83b1c1.png)
In my training with my own data the loss converges rapidly, though as well as the al…
-
```
What steps will reproduce the problem?
1. Mosaik Build
2. Mosaik Aligner with parameters -hs 15 -act 55 -mmp 0.05 -p 8
3. MosaikSort
4. Mosaik Assembler
What is the expected output? What do yo…
-
OrthoFinder version 2.5.4 Copyright (C) 2014 David Emms
2022-04-07 09:18:23 : Starting OrthoFinder 2.5.4
24 thread(s) for highly parallel tasks (BLAST searches etc.)
1 thread(s) for OrthoFinder a…
-
Hi,
I am using Arriba to analyze RNA fusions.
I downloaded public data from two different sources (A and B).
I could successfully get final tsv files from RNA sequencing data (Aligned.sortedByCo…
-
```
What steps will reproduce the problem?
1. Mosaik Build
2. Mosaik Aligner with parameters -hs 15 -act 55 -mmp 0.05 -p 8
3. MosaikSort
4. Mosaik Assembler
What is the expected output? What do yo…
-
Dear @lh3 ,
Thanks for developing miniprot. I have been trying it out & it is extremely useful.
I had an idea for a possible enhancement... it would be very interesting to be able to provide kno…
-
First of all, thanks for contributing the code to the open source community. I encountered the following problems when using it:
1, file : requirements.txt miss
2, file: setup.py miss in: python…
-
I have a bunch (~30k) of fasta sequences that I am aligning to a single reference sequence. The generated VCF file loses the identity of these ~30k sequences. Is there an option to preserve the number…